RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 OGFOD2Q6N063 350 aa4.5□□□□□ -1.69
CD44-238ENST00000534296 RUFY4Q6ZNE9 571 aa4.5□□□□□ -1.69
CD44-238ENST00000534296 ANAPC16Q96DE5 110 aa4.5□□□□□ -1.69
CD44-238ENST00000534296 FCRL2Q96LA5 508 aaPredicted RBP4.5□□□□□ -1.69
CD44-238ENST00000534296 PPP1R16BQ96T49 567 aa4.5□□□□□ -1.69
CD44-238ENST00000534296 CDADC1Q9BWV3 514 aa4.5□□□□□ -1.69
CD44-238ENST00000534296 SLC6A17Q9H1V8 727 aa4.5□□□□□ -1.69
CD44-238ENST00000534296 GPR160Q9UJ42 338 aa4.5□□□□□ -1.69
CD44-238ENST00000534296 R3HCC1Q9Y3T6 440 aaKnown RBP4.5□□□□□ -1.69
CD44-238ENST00000534296 FHOD1Q9Y613 1164 aa4.5□□□□□ -1.69
CD44-238ENST00000534296 PPM1BO75688 479 aa4.49□□□□□ -1.69
CD44-238ENST00000534296 YBX3P16989 372 aaKnown RBP eCLIP4.49□□□□□ -1.69
CD44-238ENST00000534296 ATF4P18848 351 aaPredicted RBP4.49□□□□□ -1.69
CD44-238ENST00000534296 ARID5AQ03989 594 aa4.49□□□□□ -1.69
CD44-238ENST00000534296 MLANAQ16655 118 aa4.49□□□□□ -1.69
CD44-238ENST00000534296 ADAT2Q7Z6V5 191 aaKnown RBP4.49□□□□□ -1.69
CD44-238ENST00000534296 CRACR2BQ8N4Y2 399 aaPredicted RBP4.49□□□□□ -1.69
CD44-238ENST00000534296 USHBP1Q8N6Y0 703 aa4.49□□□□□ -1.69
CD44-238ENST00000534296 POU5F2Q8N7G0 328 aa4.49□□□□□ -1.69
CD44-238ENST00000534296 MAP6Q96JE9 813 aa4.49□□□□□ -1.69
CD44-238ENST00000534296 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.49□□□□□ -1.69
CD44-238ENST00000534296 EPB41L4BQ9H329 900 aa4.49□□□□□ -1.69
CD44-238ENST00000534296 GOLGA2P5Q9HBQ8 144 aa4.49□□□□□ -1.69
CD44-238ENST00000534296 GP6Q9HCN6 339 aa4.49□□□□□ -1.69
CD44-238ENST00000534296 FAM86C1Q9NVL1 165 aa4.49□□□□□ -1.69
CD44-238ENST00000534296 C19orf73Q9NVV2 129 aa4.49□□□□□ -1.69
CD44-238ENST00000534296 WHRNQ9P202 907 aa4.49□□□□□ -1.69
CD44-238ENST00000534296 TAF6LQ9Y6J9 622 aa4.49□□□□□ -1.69
CD44-238ENST00000534296 CARMIL2Q6F5E8 1435 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 A0A087WZG4 1122 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 A0A1W2PQ27 194 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 A0A1W2PQ64 194 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 A0A1W2PQC6 194 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 A0A1W2PQD8 194 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 A0A1W2PQH9 124 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 C9IYK1 514 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 CD247P20963 164 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 ARL4AP40617 200 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 RANGAP1P46060 587 aaPredicted RBP4.48□□□□□ -1.69
CD44-238ENST00000534296 CASP7P55210 303 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 POU4F1Q01851 419 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 NCAPHQ15003 741 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 ZYXQ15942 572 aaKnown RBP4.48□□□□□ -1.69
CD44-238ENST00000534296 AXDND1Q5T1B0 1012 aaPredicted RBP4.48□□□□□ -1.69
CD44-238ENST00000534296 FYB2Q5VWT5 728 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 DCAF15Q66K64 600 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 OLFML2BQ68BL8 750 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 VHLLQ6RSH7 139 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 CRTC3Q6UUV7 619 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 CEP128Q6ZU80 1094 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 PPFIBP1Q86W92 1011 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 FIBCD1Q8N539 461 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 ZNF428Q96B54 188 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 SHDQ96IW2 340 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 FAM84AQ96KN4 292 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 HAUS7Q99871 368 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 TNFRSF10DQ9UBN6 386 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 DIS3Q9Y2L1 958 aaKnown RBP4.48□□□□□ -1.69
CD44-238ENST00000534296 SUGT1Q9Y2Z0 365 aa4.48□□□□□ -1.69
CD44-238ENST00000534296 WTIPA6NIX2 430 aaPredicted RBP4.47□□□□□ -1.69
CD44-238ENST00000534296 USP2O75604 605 aaPredicted RBP4.47□□□□□ -1.69
CD44-238ENST00000534296 ZNF205O95201 554 aa4.47□□□□□ -1.69
CD44-238ENST00000534296 VAV1P15498 845 aa4.47□□□□□ -1.69
CD44-238ENST00000534296 GALNT18Q6P9A2 607 aa4.47□□□□□ -1.69
CD44-238ENST00000534296 POMZP3Q6PJE2 187 aa4.47□□□□□ -1.69
CD44-238ENST00000534296 CYP2R1Q6VVX0 501 aa4.47□□□□□ -1.69
CD44-238ENST00000534296 JAMLQ86YT9 394 aa4.47□□□□□ -1.69
CD44-238ENST00000534296 IRF2BP1Q8IU81 584 aa4.47□□□□□ -1.69
CD44-238ENST00000534296 FBXO15Q8NCQ5 510 aaPredicted RBP4.47□□□□□ -1.69
CD44-238ENST00000534296 LINC01599Q8WXQ3 324 aa4.47□□□□□ -1.69
CD44-238ENST00000534296 LIN37Q96GY3 246 aaPredicted RBP4.47□□□□□ -1.69
CD44-238ENST00000534296 RNF32Q9H0A6 362 aa4.47□□□□□ -1.69
CD44-238ENST00000534296 NSUN3Q9H649 340 aaKnown RBP4.47□□□□□ -1.69
CD44-238ENST00000534296 NOL6Q9H6R4 1146 aaKnown RBP4.47□□□□□ -1.69
CD44-238ENST00000534296 DCP1AQ9NPI6 582 aaPredicted RBP4.47□□□□□ -1.69
CD44-238ENST00000534296 ACTR10Q9NZ32 417 aa4.47□□□□□ -1.69
CD44-238ENST00000534296 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.47□□□□□ -1.69
CD44-238ENST00000534296 ANKRD34BA5PLL1 514 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 ZNF503-AS2A6NEH8 195 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 NRDCO43847 1150 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 TBC1D8O95759 1140 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 GSTM1P09488 218 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 DNAJA1P31689 397 aaKnown RBP4.46□□□□□ -1.7
CD44-238ENST00000534296 PDE6BP35913 854 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 ZNF143P52747 638 aaPredicted RBP4.46□□□□□ -1.7
CD44-238ENST00000534296 RTP1P59025 263 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 ZNF445P59923 1031 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 ERVFC1P60507 584 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 TMEM62Q0P6H9 643 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 KIAA1211LQ6NV74 962 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 KRTAP19-1Q8IUB9 90 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 BHLHE22Q8NFJ8 381 aaPredicted RBP4.46□□□□□ -1.7
CD44-238ENST00000534296 BRF1Q92994 677 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 INTS4Q96HW7 963 aaKnown RBP4.46□□□□□ -1.7
CD44-238ENST00000534296 ZDHHC15Q96MV8 337 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 DIRC2Q96SL1 478 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 KRTAP9-9Q9BYP9 154 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 KRTAP9-4Q9BYQ2 154 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 C19orf44Q9H6X5 657 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 YBX2Q9Y2T7 364 aaKnown RBP4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms