RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	MBNL3	Q9NUK0	354 aa	Known RBP	7.45	□□□□□ -1.22
CD44-231	ENST00000531110	GFOD1	Q9NXC2	390 aa		7.45	□□□□□ -1.22
CD44-231	ENST00000531110	DIS3	Q9Y2L1	958 aa	Known RBP	7.45	□□□□□ -1.22
CD44-231	ENST00000531110	RRP9	O43818	475 aa	Known RBP	7.44	□□□□□ -1.22
CD44-231	ENST00000531110	TP53	P04637	393 aa	Predicted RBP	7.44	□□□□□ -1.22
CD44-231	ENST00000531110	RNASE1	P07998	156 aa	Known RBP	7.44	□□□□□ -1.22
CD44-231	ENST00000531110	ZNF445	P59923	1031 aa		7.44	□□□□□ -1.22
CD44-231	ENST00000531110	TEK	Q02763	1124 aa		7.44	□□□□□ -1.22
CD44-231	ENST00000531110	EGR3	Q06889	387 aa		7.44	□□□□□ -1.22
CD44-231	ENST00000531110	RAB33A	Q14088	237 aa		7.44	□□□□□ -1.22
CD44-231	ENST00000531110	SOGA3	Q5TF21	947 aa		7.44	□□□□□ -1.22
CD44-231	ENST00000531110	KIAA1211L	Q6NV74	962 aa		7.44	□□□□□ -1.22
CD44-231	ENST00000531110	FLAD1	Q8NFF5	587 aa		7.44	□□□□□ -1.22
CD44-231	ENST00000531110	EPN3	Q9H201	632 aa		7.44	□□□□□ -1.22
CD44-231	ENST00000531110	SF3B6	Q9Y3B4	125 aa	Known RBP	7.44	□□□□□ -1.22
CD44-231	ENST00000531110	ZNF451	Q9Y4E5	1061 aa		7.44	□□□□□ -1.22
CD44-231	ENST00000531110	PCDHA11	Q9Y5I1	949 aa		7.44	□□□□□ -1.22
CD44-231	ENST00000531110	PPM1B	O75688	479 aa		7.43	□□□□□ -1.22
CD44-231	ENST00000531110	GDNF	P39905	211 aa		7.43	□□□□□ -1.22
CD44-231	ENST00000531110	NOL9	Q5SY16	702 aa	Known RBP	7.43	□□□□□ -1.22
CD44-231	ENST00000531110	ATG4D	Q86TL0	474 aa	Predicted RBP	7.43	□□□□□ -1.22
CD44-231	ENST00000531110	FAM178B	Q8IXR5	827 aa		7.43	□□□□□ -1.22
CD44-231	ENST00000531110	USHBP1	Q8N6Y0	703 aa		7.43	□□□□□ -1.22
CD44-231	ENST00000531110	DHX38	Q92620	1227 aa	Known RBP	7.43	□□□□□ -1.22
CD44-231	ENST00000531110	SYTL4	Q96C24	671 aa	Predicted RBP	7.43	□□□□□ -1.22
CD44-231	ENST00000531110	SUSD2	Q9UGT4	822 aa		7.43	□□□□□ -1.22
CD44-231	ENST00000531110	TMEM59L	Q9UK28	342 aa		7.43	□□□□□ -1.22
CD44-231	ENST00000531110	ADAMTS6	Q9UKP5	1117 aa		7.43	□□□□□ -1.22
CD44-231	ENST00000531110	PCDHB10	Q9UN67	800 aa		7.43	□□□□□ -1.22
CD44-231	ENST00000531110	ARID4B	Q4LE39	1312 aa	Predicted RBP	7.43	□□□□□ -1.22
CD44-231	ENST00000531110	CENPJ	Q9HC77	1338 aa	Predicted RBP	7.43	□□□□□ -1.22
CD44-231	ENST00000531110	WASH4P	A8MWX3	477 aa		7.42	□□□□□ -1.22
CD44-231	ENST00000531110	ZNF205	O95201	554 aa		7.42	□□□□□ -1.22
CD44-231	ENST00000531110	EPHX1	P07099	455 aa		7.42	□□□□□ -1.22
CD44-231	ENST00000531110	CTSK	P43235	329 aa		7.42	□□□□□ -1.22
CD44-231	ENST00000531110	GRB10	Q13322	594 aa		7.42	□□□□□ -1.22
CD44-231	ENST00000531110	DDR2	Q16832	855 aa		7.42	□□□□□ -1.22
CD44-231	ENST00000531110	C6orf15	Q6UXA7	325 aa	Predicted RBP	7.42	□□□□□ -1.22
CD44-231	ENST00000531110	TEX2	Q8IWB9	1127 aa		7.42	□□□□□ -1.22
CD44-231	ENST00000531110	IPO4	Q8TEX9	1081 aa	Known RBP	7.42	□□□□□ -1.22
CD44-231	ENST00000531110	DSCC1	Q9BVC3	393 aa		7.42	□□□□□ -1.22
CD44-231	ENST00000531110	TCFL5	Q9UL49	500 aa		7.42	□□□□□ -1.22
CD44-231	ENST00000531110	BIN1	O00499	593 aa		7.41	□□□□□ -1.22
CD44-231	ENST00000531110	JUNB	P17275	347 aa	Predicted RBP	7.41	□□□□□ -1.22
CD44-231	ENST00000531110	IRAK1	P51617	712 aa		7.41	□□□□□ -1.22
CD44-231	ENST00000531110	DUSP4	Q13115	394 aa		7.41	□□□□□ -1.22
CD44-231	ENST00000531110	XP32	Q5T750	250 aa		7.41	□□□□□ -1.22
CD44-231	ENST00000531110	LARP1B	Q659C4	914 aa	Known RBP	7.41	□□□□□ -1.22
CD44-231	ENST00000531110	CWF19L1	Q69YN2	538 aa	Known RBP	7.41	□□□□□ -1.22
CD44-231	ENST00000531110	ARHGEF39	Q8N4T4	335 aa		7.41	□□□□□ -1.22
CD44-231	ENST00000531110	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	7.41	□□□□□ -1.22
CD44-231	ENST00000531110	FIBCD1	Q8N539	461 aa		7.41	□□□□□ -1.22
CD44-231	ENST00000531110	ZNF513	Q8N8E2	541 aa	Predicted RBP	7.41	□□□□□ -1.22
CD44-231	ENST00000531110	HNRNPLL	Q8WVV9	542 aa	Known RBP	7.41	□□□□□ -1.22
CD44-231	ENST00000531110	ZNF669	Q96BR6	464 aa	Predicted RBP	7.41	□□□□□ -1.22
CD44-231	ENST00000531110	APBA2	Q99767	749 aa		7.41	□□□□□ -1.22
CD44-231	ENST00000531110	RC3H2	Q9HBD1	1191 aa	Known RBP	7.41	□□□□□ -1.22
CD44-231	ENST00000531110	LOC105371045	A0A1W2PR82	267 aa		7.4	□□□□□ -1.22
CD44-231	ENST00000531110	RBAK-RBAKDN	I3L0D1	243 aa		7.4	□□□□□ -1.22
CD44-231	ENST00000531110	ITGB5	P18084	799 aa		7.4	□□□□□ -1.22
CD44-231	ENST00000531110	NOP2	P46087	812 aa	Known RBP	7.4	□□□□□ -1.22
CD44-231	ENST00000531110	NR0B2	Q15466	257 aa		7.4	□□□□□ -1.22
CD44-231	ENST00000531110	POMZP3	Q6PJE2	187 aa		7.4	□□□□□ -1.22
CD44-231	ENST00000531110	EEPD1	Q7L9B9	569 aa		7.4	□□□□□ -1.22
CD44-231	ENST00000531110	LRRN4CL	Q8ND94	238 aa		7.4	□□□□□ -1.22
CD44-231	ENST00000531110	LINC01599	Q8WXQ3	324 aa		7.4	□□□□□ -1.22
CD44-231	ENST00000531110	TRIM55	Q9BYV6	548 aa		7.4	□□□□□ -1.22
CD44-231	ENST00000531110	CTNND2	Q9UQB3	1225 aa		7.4	□□□□□ -1.22
CD44-231	ENST00000531110	MSRB2	Q9Y3D2	182 aa		7.4	□□□□□ -1.22
CD44-231	ENST00000531110	SSU72P8	A0A1W2PR75	194 aa		7.39	□□□□□ -1.23
CD44-231	ENST00000531110	DDAH1	O94760	285 aa		7.39	□□□□□ -1.23
CD44-231	ENST00000531110	SYP	P08247	313 aa		7.39	□□□□□ -1.23
CD44-231	ENST00000531110	ZGLP1	P0C6A0	271 aa		7.39	□□□□□ -1.23
CD44-231	ENST00000531110	VAV1	P15498	845 aa		7.39	□□□□□ -1.23
CD44-231	ENST00000531110	POU4F1	Q01851	419 aa		7.39	□□□□□ -1.23
CD44-231	ENST00000531110	CHRNE	Q04844	493 aa		7.39	□□□□□ -1.23
CD44-231	ENST00000531110	LRP10	Q7Z4F1	713 aa		7.39	□□□□□ -1.23
CD44-231	ENST00000531110	ANKS4B	Q8N8V4	417 aa		7.39	□□□□□ -1.23
CD44-231	ENST00000531110	PDZD8	Q8NEN9	1154 aa		7.39	□□□□□ -1.23
CD44-231	ENST00000531110	ST13P5	Q8NFI4	369 aa	Predicted RBP	7.39	□□□□□ -1.23
CD44-231	ENST00000531110	FCRL2	Q96LA5	508 aa	Predicted RBP	7.39	□□□□□ -1.23
CD44-231	ENST00000531110	DRC1	Q96MC2	740 aa		7.39	□□□□□ -1.23
CD44-231	ENST00000531110	FOXP3	Q9BZS1	431 aa		7.39	□□□□□ -1.23
CD44-231	ENST00000531110	C19orf73	Q9NVV2	129 aa		7.39	□□□□□ -1.23
CD44-231	ENST00000531110	SLAMF8	Q9P0V8	285 aa		7.39	□□□□□ -1.23
CD44-231	ENST00000531110	SIRPG	Q9P1W8	387 aa		7.39	□□□□□ -1.23
CD44-231	ENST00000531110	TMEM82	A0PJX8	343 aa		7.38	□□□□□ -1.23
CD44-231	ENST00000531110	U2SURP	O15042	1029 aa	Known RBP	7.38	□□□□□ -1.23
CD44-231	ENST00000531110	SUSD5	O60279	629 aa		7.38	□□□□□ -1.23
CD44-231	ENST00000531110	GJB6	O95452	261 aa		7.38	□□□□□ -1.23
CD44-231	ENST00000531110	HPX	P02790	462 aa		7.38	□□□□□ -1.23
CD44-231	ENST00000531110	GTF2F1	P35269	517 aa	Known RBP eCLIP	7.38	□□□□□ -1.23
CD44-231	ENST00000531110	KIR2DL1	P43626	348 aa	Predicted RBP	7.38	□□□□□ -1.23
CD44-231	ENST00000531110	KIR2DL2	P43627	348 aa	Predicted RBP	7.38	□□□□□ -1.23
CD44-231	ENST00000531110	CRTC3	Q6UUV7	619 aa		7.38	□□□□□ -1.23
CD44-231	ENST00000531110	OXR1	Q8N573	874 aa		7.38	□□□□□ -1.23
CD44-231	ENST00000531110	CCDC136	Q96JN2	1154 aa		7.38	□□□□□ -1.23
CD44-231	ENST00000531110	G6PC3	Q9BUM1	346 aa		7.38	□□□□□ -1.23
CD44-231	ENST00000531110	NOL6	Q9H6R4	1146 aa	Known RBP	7.38	□□□□□ -1.23
CD44-231	ENST00000531110	PRDM7	Q9NQW5	492 aa		7.38	□□□□□ -1.23

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