RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 KCTD1Q719H9 257 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 NCAPG2Q86XI2 1143 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 GMCL1Q96IK5 515 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 TMEM47Q9BQJ4 181 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 DSCC1Q9BVC3 393 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 MROH8Q9H579 483 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 ZNF287Q9HBT7 754 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 HMX1Q9NP08 348 aaPredicted RBP12.63□□□□□ -0.39
CD44-227ENST00000528086 DIAPH3Q9NSV4 1193 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 TCP11L1Q9NUJ3 509 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 PCDH10Q9P2E7 1040 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 DNAJC25-GNG10A0A024R161 153 aa12.62□□□□□ -0.39
CD44-227ENST00000528086 STRNO43815 780 aa12.62□□□□□ -0.39
CD44-227ENST00000528086 FARP2O94887 1054 aaPredicted RBP12.62□□□□□ -0.39
CD44-227ENST00000528086 PGK2P07205 417 aa12.62□□□□□ -0.39
CD44-227ENST00000528086 SLC3A2P08195 630 aaKnown RBP12.62□□□□□ -0.39
CD44-227ENST00000528086 CYBAP13498 195 aa12.62□□□□□ -0.39
CD44-227ENST00000528086 ZNF792Q3KQV3 632 aa12.62□□□□□ -0.39
CD44-227ENST00000528086 RRP12Q5JTH9 1297 aaKnown RBP12.62□□□□□ -0.39
CD44-227ENST00000528086 PRAMEF19Q5SWL8 479 aa12.62□□□□□ -0.39
CD44-227ENST00000528086 PRPF38BQ5VTL8 546 aaKnown RBP12.62□□□□□ -0.39
CD44-227ENST00000528086 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.62□□□□□ -0.39
CD44-227ENST00000528086 ABRAQ8N0Z2 381 aa12.62□□□□□ -0.39
CD44-227ENST00000528086 PRPF38AQ8NAV1 312 aaKnown RBP12.62□□□□□ -0.39
CD44-227ENST00000528086 RAVER2Q9HCJ3 691 aaKnown RBP12.62□□□□□ -0.39
CD44-227ENST00000528086 TMEM232C9JQI7 657 aa12.61□□□□□ -0.39
CD44-227ENST00000528086 PLA2G6O60733 806 aa12.61□□□□□ -0.39
CD44-227ENST00000528086 TFRCP02786 760 aaKnown RBP12.61□□□□□ -0.39
CD44-227ENST00000528086 OLFML2BQ68BL8 750 aa12.61□□□□□ -0.39
CD44-227ENST00000528086 CCAR1Q8IX12 1150 aaKnown RBP12.61□□□□□ -0.39
CD44-227ENST00000528086 KIFC2Q96AC6 838 aa12.61□□□□□ -0.39
CD44-227ENST00000528086 PAWRQ96IZ0 340 aaKnown RBP12.61□□□□□ -0.39
CD44-227ENST00000528086 MAML3Q96JK9 1138 aa12.61□□□□□ -0.39
CD44-227ENST00000528086 ZKSCAN3Q9BRR0 538 aa12.61□□□□□ -0.39
CD44-227ENST00000528086 FEM1BQ9UK73 627 aa12.61□□□□□ -0.39
CD44-227ENST00000528086 STX8Q9UNK0 236 aa12.61□□□□□ -0.39
CD44-227ENST00000528086 ASTN1O14525 1302 aa12.61□□□□□ -0.39
CD44-227ENST00000528086 PFASO15067 1338 aa12.61□□□□□ -0.39
CD44-227ENST00000528086 B4E1Z4 1266 aa12.6□□□□□ -0.39
CD44-227ENST00000528086 SGSM2O43147 1006 aa12.6□□□□□ -0.39
CD44-227ENST00000528086 SLC25A27O95847 323 aa12.6□□□□□ -0.39
CD44-227ENST00000528086 SNHG28P0DPA3 235 aa12.6□□□□□ -0.39
CD44-227ENST00000528086 COL6A1P12109 1028 aa12.6□□□□□ -0.39
CD44-227ENST00000528086 SNRNP48Q6IEG0 339 aaKnown RBP12.6□□□□□ -0.39
CD44-227ENST00000528086 BTNL9Q6UXG8 535 aa12.6□□□□□ -0.39
CD44-227ENST00000528086 STOX1Q6ZVD7 989 aa12.6□□□□□ -0.39
CD44-227ENST00000528086 TRMT44Q8IYL2 757 aaKnown RBP12.6□□□□□ -0.39
CD44-227ENST00000528086 CPXCR1Q8N123 301 aa12.6□□□□□ -0.39
CD44-227ENST00000528086 AGBL1Q96MI9 1066 aa12.6□□□□□ -0.39
CD44-227ENST00000528086 TEX13BQ9BXU2 312 aa12.6□□□□□ -0.39
CD44-227ENST00000528086 ZSWIM5Q9P217 1185 aa12.6□□□□□ -0.39
CD44-227ENST00000528086 PRR12Q9ULL5 1215 aa12.6□□□□□ -0.39
CD44-227ENST00000528086 IVNS1ABPQ9Y6Y0 642 aa12.6□□□□□ -0.39
CD44-227ENST00000528086 H0YGN5 161 aa12.59□□□□□ -0.39
CD44-227ENST00000528086 HIP1O00291 1037 aa12.59□□□□□ -0.39
CD44-227ENST00000528086 KDM4AO75164 1064 aa12.59□□□□□ -0.39
CD44-227ENST00000528086 CYP21A2P08686 494 aa12.59□□□□□ -0.39
CD44-227ENST00000528086 PDHBP11177 359 aa12.59□□□□□ -0.39
CD44-227ENST00000528086 TOP1P11387 765 aaKnown RBP12.59□□□□□ -0.39
CD44-227ENST00000528086 FCER1AP12319 257 aa12.59□□□□□ -0.39
CD44-227ENST00000528086 SLC16A2P36021 539 aa12.59□□□□□ -0.39
CD44-227ENST00000528086 MFSD6Q6ZSS7 791 aa12.59□□□□□ -0.39
CD44-227ENST00000528086 CYB5R4Q7L1T6 521 aa12.59□□□□□ -0.39
CD44-227ENST00000528086 DPP9Q86TI2 863 aa12.59□□□□□ -0.39
CD44-227ENST00000528086 ANKS1AQ92625 1134 aa12.59□□□□□ -0.39
CD44-227ENST00000528086 MMP19Q99542 508 aa12.59□□□□□ -0.39
CD44-227ENST00000528086 CPVLQ9H3G5 476 aa12.59□□□□□ -0.39
CD44-227ENST00000528086 MTMR7Q9Y216 660 aa12.59□□□□□ -0.39
CD44-227ENST00000528086 DDX49Q9Y6V7 483 aaKnown RBP12.59□□□□□ -0.39
CD44-227ENST00000528086 LRRC37A2A6NM11 1700 aa12.58□□□□□ -0.4
CD44-227ENST00000528086 ZNF213O14771 459 aa12.58□□□□□ -0.4
CD44-227ENST00000528086 SNAI1O95863 264 aaPredicted RBP12.58□□□□□ -0.4
CD44-227ENST00000528086 ZNF865P0CJ78 1059 aaPredicted RBP12.58□□□□□ -0.4
CD44-227ENST00000528086 SLC1A4P43007 532 aa12.58□□□□□ -0.4
CD44-227ENST00000528086 MFAP1P55081 439 aaKnown RBP12.58□□□□□ -0.4
CD44-227ENST00000528086 SEC23AQ15436 765 aa12.58□□□□□ -0.4
CD44-227ENST00000528086 SLC35G1Q2M3R5 365 aa12.58□□□□□ -0.4
CD44-227ENST00000528086 MUM1L1Q5H9M0 696 aa12.58□□□□□ -0.4
CD44-227ENST00000528086 MFSD14CQ5VZR4 134 aa12.58□□□□□ -0.4
CD44-227ENST00000528086 ANO1Q5XXA6 986 aa12.58□□□□□ -0.4
CD44-227ENST00000528086 ENAHQ8N8S7 591 aaPredicted RBP12.58□□□□□ -0.4
CD44-227ENST00000528086 SENP2Q9HC62 589 aa12.58□□□□□ -0.4
CD44-227ENST00000528086 TOMM22Q9NS69 142 aa12.58□□□□□ -0.4
CD44-227ENST00000528086 FRMPD2Q68DX3 1309 aaPredicted RBP12.58□□□□□ -0.4
CD44-227ENST00000528086 RAD50Q92878 1312 aa12.58□□□□□ -0.4
CD44-227ENST00000528086 TRIOBPQ9H2D6 2365 aa12.57□□□□□ -0.4
CD44-227ENST00000528086 ADCY6O43306 1168 aa12.57□□□□□ -0.4
CD44-227ENST00000528086 ZBED4O75132 1171 aa12.57□□□□□ -0.4
CD44-227ENST00000528086 PCP11498 1178 aaKnown RBP12.57□□□□□ -0.4
CD44-227ENST00000528086 STAT2P52630 851 aa12.57□□□□□ -0.4
CD44-227ENST00000528086 OAZ1P54368 228 aa12.57□□□□□ -0.4
CD44-227ENST00000528086 CNTN2Q02246 1040 aa12.57□□□□□ -0.4
CD44-227ENST00000528086 ZNF543Q08ER8 600 aa12.57□□□□□ -0.4
CD44-227ENST00000528086 FAM160B2Q86V87 743 aa12.57□□□□□ -0.4
CD44-227ENST00000528086 ANKLE1Q8NAG6 615 aa12.57□□□□□ -0.4
CD44-227ENST00000528086 DCAF4Q8WV16 495 aa12.57□□□□□ -0.4
CD44-227ENST00000528086 TTC14Q96N46 770 aa12.57□□□□□ -0.4
CD44-227ENST00000528086 PURBQ96QR8 312 aaKnown RBP12.57□□□□□ -0.4
CD44-227ENST00000528086 KATNBL1Q9H079 304 aa12.57□□□□□ -0.4
CD44-227ENST00000528086 RANBP17Q9H2T7 1088 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms