RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PCBP3P57721 371 aaKnown RBP6.67□□□□□ -1.34
CD44-217ENST00000525348 PRR23BQ6ZRT6 265 aa6.67□□□□□ -1.34
CD44-217ENST00000525348 BRF1Q92994 677 aa6.67□□□□□ -1.34
CD44-217ENST00000525348 ANAPC16Q96DE5 110 aa6.67□□□□□ -1.34
CD44-217ENST00000525348 USP2O75604 605 aaPredicted RBP6.66□□□□□ -1.34
CD44-217ENST00000525348 RAC2P15153 192 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 VAV1P15498 845 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 CD247P20963 164 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 BMP8BP34820 402 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 GALK1P51570 392 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 CASP7P55210 303 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 MESP2Q0VG99 397 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 NR0B2Q15466 257 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 PPP2R5EQ16537 467 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 MLANAQ16655 118 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 RTP2Q5QGT7 225 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 ZNF648Q5T619 568 aaPredicted RBP6.66□□□□□ -1.34
CD44-217ENST00000525348 DHX38Q92620 1227 aaKnown RBP6.66□□□□□ -1.34
CD44-217ENST00000525348 SHISA4Q96DD7 197 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 MAP6Q96JE9 813 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 HHIPL1Q96JK4 782 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 KLHL25Q9H0H3 589 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 KCNK12Q9HB15 430 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 STRIP2Q9ULQ0 834 aa6.66□□□□□ -1.34
CD44-217ENST00000525348 FITM1A5D6W6 292 aa6.65□□□□□ -1.34
CD44-217ENST00000525348 LRRC10BA6NIK2 292 aa6.65□□□□□ -1.34
CD44-217ENST00000525348 PSPNO60542 156 aa6.65□□□□□ -1.34
CD44-217ENST00000525348 DUSP4Q13115 394 aa6.65□□□□□ -1.34
CD44-217ENST00000525348 GNPTABQ3T906 1256 aa6.65□□□□□ -1.34
CD44-217ENST00000525348 OXR1Q8N573 874 aa6.65□□□□□ -1.34
CD44-217ENST00000525348 ANKS4BQ8N8V4 417 aa6.65□□□□□ -1.34
CD44-217ENST00000525348 HAUS7Q99871 368 aa6.65□□□□□ -1.34
CD44-217ENST00000525348 DSCC1Q9BVC3 393 aa6.65□□□□□ -1.34
CD44-217ENST00000525348 PHAXQ9H814 394 aaKnown RBP6.65□□□□□ -1.34
CD44-217ENST00000525348 GOLGA2P5Q9HBQ8 144 aa6.65□□□□□ -1.34
CD44-217ENST00000525348 SUSD2Q9UGT4 822 aa6.65□□□□□ -1.34
CD44-217ENST00000525348 ZMYM5Q9UJ78 669 aa6.65□□□□□ -1.34
CD44-217ENST00000525348 SLC12A7Q9Y666 1083 aa6.65□□□□□ -1.34
CD44-217ENST00000525348 MRVI1Q9Y6F6 885 aa6.65□□□□□ -1.34
CD44-217ENST00000525348 SSU72P8A0A1W2PR75 194 aa6.64□□□□□ -1.35
CD44-217ENST00000525348 GSNP06396 782 aa6.64□□□□□ -1.35
CD44-217ENST00000525348 EPHX1P07099 455 aa6.64□□□□□ -1.35
CD44-217ENST00000525348 FGRP09769 529 aa6.64□□□□□ -1.35
CD44-217ENST00000525348 SLC7A5Q01650 507 aa6.64□□□□□ -1.35
CD44-217ENST00000525348 FIBCD1Q8N539 461 aa6.64□□□□□ -1.35
CD44-217ENST00000525348 SLC12A9Q9BXP2 914 aa6.64□□□□□ -1.35
CD44-217ENST00000525348 AP5S1Q9NUS5 200 aa6.64□□□□□ -1.35
CD44-217ENST00000525348 ERVK13-1Q9NX77 482 aa6.64□□□□□ -1.35
CD44-217ENST00000525348 FHOD1Q9Y613 1164 aa6.64□□□□□ -1.35
CD44-217ENST00000525348 SMAD7O15105 426 aaKnown RBP6.63□□□□□ -1.35
CD44-217ENST00000525348 ETFBP38117 255 aa6.63□□□□□ -1.35
CD44-217ENST00000525348 CHRNEQ04844 493 aa6.63□□□□□ -1.35
CD44-217ENST00000525348 KIR3DS1Q14943 382 aa6.63□□□□□ -1.35
CD44-217ENST00000525348 MPZL3Q6UWV2 235 aa6.63□□□□□ -1.35
CD44-217ENST00000525348 LILRA2Q8N149 483 aa6.63□□□□□ -1.35
CD44-217ENST00000525348 ZNF513Q8N8E2 541 aaPredicted RBP6.63□□□□□ -1.35
CD44-217ENST00000525348 TMEM52Q8NDY8 209 aa6.63□□□□□ -1.35
CD44-217ENST00000525348 ADCY4Q8NFM4 1077 aa6.63□□□□□ -1.35
CD44-217ENST00000525348 FCRL2Q96LA5 508 aaPredicted RBP6.63□□□□□ -1.35
CD44-217ENST00000525348 PLCD4Q9BRC7 762 aa6.63□□□□□ -1.35
CD44-217ENST00000525348 NOL6Q9H6R4 1146 aaKnown RBP6.63□□□□□ -1.35
CD44-217ENST00000525348 GPR160Q9UJ42 338 aa6.63□□□□□ -1.35
CD44-217ENST00000525348 FADS2P1A8MWK0 482 aa6.62□□□□□ -1.35
CD44-217ENST00000525348 C8AP07357 584 aa6.62□□□□□ -1.35
CD44-217ENST00000525348 ITGA4P13612 1032 aa6.62□□□□□ -1.35
CD44-217ENST00000525348 KIR2DL1P43626 348 aaPredicted RBP6.62□□□□□ -1.35
CD44-217ENST00000525348 KIR2DL2P43627 348 aaPredicted RBP6.62□□□□□ -1.35
CD44-217ENST00000525348 NOL9Q5SY16 702 aaKnown RBP6.62□□□□□ -1.35
CD44-217ENST00000525348 NLRX1Q86UT6 975 aa6.62□□□□□ -1.35
CD44-217ENST00000525348 MCF2L2Q86YR7 1114 aa6.62□□□□□ -1.35
CD44-217ENST00000525348 SYTL4Q96C24 671 aaPredicted RBP6.62□□□□□ -1.35
CD44-217ENST00000525348 FGD4Q96M96 766 aa6.62□□□□□ -1.35
CD44-217ENST00000525348 ZDHHC15Q96MV8 337 aa6.62□□□□□ -1.35
CD44-217ENST00000525348 DIRC2Q96SL1 478 aa6.62□□□□□ -1.35
CD44-217ENST00000525348 MCMBPQ9BTE3 642 aa6.62□□□□□ -1.35
CD44-217ENST00000525348 CDADC1Q9BWV3 514 aa6.62□□□□□ -1.35
CD44-217ENST00000525348 GPR55Q9Y2T6 319 aaPredicted RBP6.62□□□□□ -1.35
CD44-217ENST00000525348 YBX2Q9Y2T7 364 aaKnown RBP6.62□□□□□ -1.35
CD44-217ENST00000525348 E9PSI1 815 aa6.61□□□□□ -1.35
CD44-217ENST00000525348 NRDCO43847 1150 aa6.61□□□□□ -1.35
CD44-217ENST00000525348 GSTM1P09488 218 aa6.61□□□□□ -1.35
CD44-217ENST00000525348 IFNGR1P15260 489 aa6.61□□□□□ -1.35
CD44-217ENST00000525348 PPP2R5DQ14738 602 aa6.61□□□□□ -1.35
CD44-217ENST00000525348 TCEAL1Q15170 157 aa6.61□□□□□ -1.35
CD44-217ENST00000525348 KIAA1211LQ6NV74 962 aa6.61□□□□□ -1.35
CD44-217ENST00000525348 VHLLQ6RSH7 139 aa6.61□□□□□ -1.35
CD44-217ENST00000525348 CEP128Q6ZU80 1094 aa6.61□□□□□ -1.35
CD44-217ENST00000525348 SPPL2CQ8IUH8 684 aa6.61□□□□□ -1.35
CD44-217ENST00000525348 FCRL3Q96P31 734 aaPredicted RBP6.61□□□□□ -1.35
CD44-217ENST00000525348 NSUN3Q9H649 340 aaKnown RBP6.61□□□□□ -1.35
CD44-217ENST00000525348 FAM53CQ9NYF3 392 aa6.61□□□□□ -1.35
CD44-217ENST00000525348 WHRNQ9P202 907 aa6.61□□□□□ -1.35
CD44-217ENST00000525348 A0A087WZG4 1122 aa6.6□□□□□ -1.35
CD44-217ENST00000525348 B2RBV5 119 aa6.6□□□□□ -1.35
CD44-217ENST00000525348 FARP2O94887 1054 aaPredicted RBP6.6□□□□□ -1.35
CD44-217ENST00000525348 SSBP05455 408 aaKnown RBP eCLIP6.6□□□□□ -1.35
CD44-217ENST00000525348 ZNF124Q15973 351 aa6.6□□□□□ -1.35
CD44-217ENST00000525348 HSF5Q4G112 596 aaPredicted RBP6.6□□□□□ -1.35
CD44-217ENST00000525348 HEATR6Q6AI08 1181 aaKnown RBP6.6□□□□□ -1.35
CD44-217ENST00000525348 SLCO6A1Q86UG4 719 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms