RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 JAKMIP1Q96N16 626 aaKnown RBP16.68■□□□□ 0.26
NUP54-216ENST00000514901 LY9Q9HBG7 655 aa16.68■□□□□ 0.26
NUP54-216ENST00000514901 SLC38A10Q9HBR0 1119 aa16.68■□□□□ 0.26
NUP54-216ENST00000514901 CWC22Q9HCG8 908 aaKnown RBP16.68■□□□□ 0.26
NUP54-216ENST00000514901 SRRDQ9UH36 339 aa16.68■□□□□ 0.26
NUP54-216ENST00000514901 SH2B2O14492 632 aaPredicted RBP16.67■□□□□ 0.26
NUP54-216ENST00000514901 CTGFP29279 349 aa16.67■□□□□ 0.26
NUP54-216ENST00000514901 STAT3P40763 770 aa16.67■□□□□ 0.26
NUP54-216ENST00000514901 CAP1Q01518 475 aa16.67■□□□□ 0.26
NUP54-216ENST00000514901 BLOC1S2Q6QNY1 142 aa16.67■□□□□ 0.26
NUP54-216ENST00000514901 RIOX2Q8IUF8 465 aa16.67■□□□□ 0.26
NUP54-216ENST00000514901 REPS2Q8NFH8 660 aa16.67■□□□□ 0.26
NUP54-216ENST00000514901 CHMP4CQ96CF2 233 aa16.67■□□□□ 0.26
NUP54-216ENST00000514901 MAP3K14Q99558 947 aa16.67■□□□□ 0.26
NUP54-216ENST00000514901 MOV10L1Q9BXT6 1211 aaKnown RBP16.67■□□□□ 0.26
NUP54-216ENST00000514901 MROH8Q9H579 483 aa16.67■□□□□ 0.26
NUP54-216ENST00000514901 GPCPD1Q9NPB8 672 aa16.67■□□□□ 0.26
NUP54-216ENST00000514901 PNMA2Q9UL42 364 aa16.67■□□□□ 0.26
NUP54-216ENST00000514901 PTPN22Q9Y2R2 807 aa16.67■□□□□ 0.26
NUP54-216ENST00000514901 FRMPD2Q68DX3 1309 aaPredicted RBP16.67■□□□□ 0.26
NUP54-216ENST00000514901 DOCK3Q8IZD9 2030 aa16.67■□□□□ 0.26
NUP54-216ENST00000514901 PARP14Q460N5 1801 aa16.66■□□□□ 0.26
NUP54-216ENST00000514901 CCDC69A6NI79 296 aa16.66■□□□□ 0.26
NUP54-216ENST00000514901 STRNO43815 780 aa16.66■□□□□ 0.26
NUP54-216ENST00000514901 PEX10O60683 326 aa16.66■□□□□ 0.26
NUP54-216ENST00000514901 ANAPC15P60006 121 aa16.66■□□□□ 0.26
NUP54-216ENST00000514901 C8orf34Q49A92 452 aa16.66■□□□□ 0.26
NUP54-216ENST00000514901 SYDE2Q5VT97 1194 aa16.66■□□□□ 0.26
NUP54-216ENST00000514901 TTBK2Q6IQ55 1244 aa16.66■□□□□ 0.26
NUP54-216ENST00000514901 NFXL1Q6ZNB6 911 aa16.66■□□□□ 0.26
NUP54-216ENST00000514901 PLEKHH3Q7Z736 793 aa16.66■□□□□ 0.26
NUP54-216ENST00000514901 TEX13BQ9BXU2 312 aa16.66■□□□□ 0.26
NUP54-216ENST00000514901 TM6SF1Q9BZW5 370 aa16.66■□□□□ 0.26
NUP54-216ENST00000514901 MCOLN1Q9GZU1 580 aa16.66■□□□□ 0.26
NUP54-216ENST00000514901 PORCNQ9H237 461 aa16.66■□□□□ 0.26
NUP54-216ENST00000514901 ZNF214Q9UL59 606 aaPredicted RBP16.66■□□□□ 0.26
NUP54-216ENST00000514901 PRR12Q9ULL5 1215 aa16.66■□□□□ 0.26
NUP54-216ENST00000514901 MGAMO43451 1857 aa16.65■□□□□ 0.26
NUP54-216ENST00000514901 DDAH1O94760 285 aa16.65■□□□□ 0.26
NUP54-216ENST00000514901 CALM1P0DP23 149 aa16.65■□□□□ 0.26
NUP54-216ENST00000514901 CALM2P0DP24 149 aa16.65■□□□□ 0.26
NUP54-216ENST00000514901 CALM3P0DP25 149 aa16.65■□□□□ 0.26
NUP54-216ENST00000514901 TROAPQ12815 778 aa16.65■□□□□ 0.26
NUP54-216ENST00000514901 SYNE3Q6ZMZ3 975 aa16.65■□□□□ 0.26
NUP54-216ENST00000514901 GPR142Q7Z601 462 aa16.65■□□□□ 0.26
NUP54-216ENST00000514901 SGMS1Q86VZ5 419 aa16.65■□□□□ 0.26
NUP54-216ENST00000514901 TNS4Q8IZW8 715 aa16.65■□□□□ 0.26
NUP54-216ENST00000514901 SOCS4Q8WXH5 440 aa16.65■□□□□ 0.26
NUP54-216ENST00000514901 SENP2Q9HC62 589 aa16.65■□□□□ 0.26
NUP54-216ENST00000514901 IVNS1ABPQ9Y6Y0 642 aa16.65■□□□□ 0.26
NUP54-216ENST00000514901 PALM3A6NDB9 673 aaPredicted RBP16.64■□□□□ 0.25
NUP54-216ENST00000514901 ECM2O94769 699 aaPredicted RBP16.64■□□□□ 0.25
NUP54-216ENST00000514901 ERCC3P19447 782 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 CASTP20810 708 aaKnown RBP16.64■□□□□ 0.25
NUP54-216ENST00000514901 RPS6KB1P23443 525 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 KIF5BP33176 963 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 SLC16A2P36021 539 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 FGD1P98174 961 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 IRF5Q13568 498 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 GRM4Q14833 912 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 WDR78Q5VTH9 848 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 RASGRP2Q7LDG7 609 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 NCAPG2Q86XI2 1143 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 ZNF654Q8IZM8 581 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 ABRAQ8N0Z2 381 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 CPXCR1Q8N123 301 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 FBXL16Q8N461 479 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 RAET1EQ8TD07 263 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 NUDT12Q9BQG2 462 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 LRRC2Q9BYS8 371 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 RANBP17Q9H2T7 1088 aaKnown RBP16.64■□□□□ 0.25
NUP54-216ENST00000514901 ZSWIM6Q9HCJ5 1215 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 GJD2Q9UKL4 321 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 SLC12A7Q9Y666 1083 aa16.64■□□□□ 0.25
NUP54-216ENST00000514901 A0A0G2JMZ2 1700 aa16.63■□□□□ 0.25
NUP54-216ENST00000514901 SLC15A5A6NIM6 579 aa16.63■□□□□ 0.25
NUP54-216ENST00000514901 KLRF2D3W0D1 207 aa16.63■□□□□ 0.25
NUP54-216ENST00000514901 GOLGA8HP0CJ92 632 aa16.63■□□□□ 0.25
NUP54-216ENST00000514901 PTPREP23469 700 aa16.63■□□□□ 0.25
NUP54-216ENST00000514901 FLT3LGP49771 235 aa16.63■□□□□ 0.25
NUP54-216ENST00000514901 GNAQP50148 359 aa16.63■□□□□ 0.25
NUP54-216ENST00000514901 PRKCZQ05513 592 aa16.63■□□□□ 0.25
NUP54-216ENST00000514901 COL9A3Q14050 684 aaPredicted RBP16.63■□□□□ 0.25
NUP54-216ENST00000514901 TKFCQ3LXA3 575 aa16.63■□□□□ 0.25
NUP54-216ENST00000514901 SNRNP48Q6IEG0 339 aaKnown RBP16.63■□□□□ 0.25
NUP54-216ENST00000514901 RUFY3Q7L099 469 aa16.63■□□□□ 0.25
NUP54-216ENST00000514901 CTCFLQ8NI51 663 aaPredicted RBP16.63■□□□□ 0.25
NUP54-216ENST00000514901 RAVER2Q9HCJ3 691 aaKnown RBP16.63■□□□□ 0.25
NUP54-216ENST00000514901 GPHNQ9NQX3 736 aaPredicted RBP16.63■□□□□ 0.25
NUP54-216ENST00000514901 FBXO40Q9UH90 709 aa16.63■□□□□ 0.25
NUP54-216ENST00000514901 MAD2L2Q9UI95 211 aa16.63■□□□□ 0.25
NUP54-216ENST00000514901 CYP46A1Q9Y6A2 500 aa16.63■□□□□ 0.25
NUP54-216ENST00000514901 SEC24BO95487 1268 aa16.62■□□□□ 0.25
NUP54-216ENST00000514901 FCER1AP12319 257 aa16.62■□□□□ 0.25
NUP54-216ENST00000514901 XRCC5P13010 732 aaKnown RBP16.62■□□□□ 0.25
NUP54-216ENST00000514901 SMARCA1P28370 1054 aa16.62■□□□□ 0.25
NUP54-216ENST00000514901 MORN1Q5T089 497 aa16.62■□□□□ 0.25
NUP54-216ENST00000514901 NBPF11Q86T75 865 aa16.62■□□□□ 0.25
NUP54-216ENST00000514901 CHST13Q8NET6 341 aa16.62■□□□□ 0.25
NUP54-216ENST00000514901 NUP133Q8WUM0 1156 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms