RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 SPICE1Q8N0Z3 855 aa12.91□□□□□ -0.34
NEDD9-215ENST00000514660 SLC43A3Q8NBI5 491 aa12.91□□□□□ -0.34
NEDD9-215ENST00000514660 REPS2Q8NFH8 660 aa12.91□□□□□ -0.34
NEDD9-215ENST00000514660 NOL10Q9BSC4 688 aaKnown RBP12.91□□□□□ -0.34
NEDD9-215ENST00000514660 COG5Q9UP83 839 aa12.91□□□□□ -0.34
NEDD9-215ENST00000514660 DIS3Q9Y2L1 958 aaKnown RBP12.91□□□□□ -0.34
NEDD9-215ENST00000514660 ASTN1O14525 1302 aa12.9□□□□□ -0.34
NEDD9-215ENST00000514660 DUSP11O75319 330 aaKnown RBP12.9□□□□□ -0.34
NEDD9-215ENST00000514660 FLOT1O75955 427 aa12.9□□□□□ -0.34
NEDD9-215ENST00000514660 ZAP70P43403 619 aa12.9□□□□□ -0.34
NEDD9-215ENST00000514660 CCDC174Q6PII3 467 aa12.9□□□□□ -0.34
NEDD9-215ENST00000514660 SAMD1Q6SPF0 538 aaPredicted RBP12.9□□□□□ -0.34
NEDD9-215ENST00000514660 RIOX2Q8IUF8 465 aa12.9□□□□□ -0.34
NEDD9-215ENST00000514660 TET1Q8NFU7 2136 aa12.9□□□□□ -0.34
NEDD9-215ENST00000514660 HLA-CQ95604 372 aa12.9□□□□□ -0.34
NEDD9-215ENST00000514660 SCLYQ96I15 445 aa12.9□□□□□ -0.34
NEDD9-215ENST00000514660 GLT1D1Q96MS3 346 aa12.9□□□□□ -0.34
NEDD9-215ENST00000514660 DBNDD2Q9BQY9 259 aa12.9□□□□□ -0.34
NEDD9-215ENST00000514660 NOC4LQ9BVI4 516 aaKnown RBP12.9□□□□□ -0.34
NEDD9-215ENST00000514660 UPF3AQ9H1J1 476 aaKnown RBP12.9□□□□□ -0.34
NEDD9-215ENST00000514660 ZNF214Q9UL59 606 aaPredicted RBP12.9□□□□□ -0.34
NEDD9-215ENST00000514660 MROH7Q68CQ1 1323 aa12.89□□□□□ -0.35
NEDD9-215ENST00000514660 DNAJC25-GNG10A0A024R161 153 aa12.89□□□□□ -0.35
NEDD9-215ENST00000514660 A0A0U1RQG5 324 aaPredicted RBP12.89□□□□□ -0.35
NEDD9-215ENST00000514660 C6orf222P0C671 652 aaPredicted RBP12.89□□□□□ -0.35
NEDD9-215ENST00000514660 CYP7A1P22680 504 aa12.89□□□□□ -0.35
NEDD9-215ENST00000514660 BEX3Q00994 111 aa12.89□□□□□ -0.35
NEDD9-215ENST00000514660 TAP1Q03518 808 aa12.89□□□□□ -0.35
NEDD9-215ENST00000514660 GRB10Q13322 594 aa12.89□□□□□ -0.35
NEDD9-215ENST00000514660 MB21D1Q8N884 522 aa12.89□□□□□ -0.35
NEDD9-215ENST00000514660 AGBL1Q96MI9 1066 aa12.89□□□□□ -0.35
NEDD9-215ENST00000514660 TRPV6Q9H1D0 765 aa12.89□□□□□ -0.35
NEDD9-215ENST00000514660 HIPK3Q9H422 1215 aa12.89□□□□□ -0.35
NEDD9-215ENST00000514660 ZHX1Q9UKY1 873 aaPredicted RBP12.89□□□□□ -0.35
NEDD9-215ENST00000514660 FAM184BQ9ULE4 1060 aa12.89□□□□□ -0.35
NEDD9-215ENST00000514660 RIPK3Q9Y572 518 aa12.89□□□□□ -0.35
NEDD9-215ENST00000514660 SLC4A7Q9Y6M7 1214 aa12.89□□□□□ -0.35
NEDD9-215ENST00000514660 U3KPZ7 1027 aaPredicted RBP12.89□□□□□ -0.35
NEDD9-215ENST00000514660 NAV1Q8NEY1 1877 aa12.89□□□□□ -0.35
NEDD9-215ENST00000514660 SRGAP3O43295 1099 aa12.88□□□□□ -0.35
NEDD9-215ENST00000514660 CYP2D6P10635 497 aa12.88□□□□□ -0.35
NEDD9-215ENST00000514660 ATP2A2P16615 1042 aaKnown RBP12.88□□□□□ -0.35
NEDD9-215ENST00000514660 GJA9P57773 515 aa12.88□□□□□ -0.35
NEDD9-215ENST00000514660 MTX1Q13505 466 aa12.88□□□□□ -0.35
NEDD9-215ENST00000514660 GORABQ5T7V8 394 aa12.88□□□□□ -0.35
NEDD9-215ENST00000514660 ATF7IPQ6VMQ6 1270 aa12.88□□□□□ -0.35
NEDD9-215ENST00000514660 FAM178BQ8IXR5 827 aa12.88□□□□□ -0.35
NEDD9-215ENST00000514660 ARNTL2Q8WYA1 636 aa12.88□□□□□ -0.35
NEDD9-215ENST00000514660 VTI1AQ96AJ9 217 aa12.88□□□□□ -0.35
NEDD9-215ENST00000514660 KATNBL1Q9H079 304 aa12.88□□□□□ -0.35
NEDD9-215ENST00000514660 CABP5Q9NP86 173 aa12.88□□□□□ -0.35
NEDD9-215ENST00000514660 PNMA6EA0A0J9YXQ4 647 aa12.87□□□□□ -0.35
NEDD9-215ENST00000514660 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.87□□□□□ -0.35
NEDD9-215ENST00000514660 B4GALT4O60513 344 aa12.87□□□□□ -0.35
NEDD9-215ENST00000514660 SLC25A27O95847 323 aa12.87□□□□□ -0.35
NEDD9-215ENST00000514660 UQCRFS1P1P0C7P4 283 aa12.87□□□□□ -0.35
NEDD9-215ENST00000514660 IL9P15248 144 aa12.87□□□□□ -0.35
NEDD9-215ENST00000514660 USP5P45974 858 aa12.87□□□□□ -0.35
NEDD9-215ENST00000514660 NKX3-2P78367 333 aa12.87□□□□□ -0.35
NEDD9-215ENST00000514660 GNASQ5JWF2 1037 aa12.87□□□□□ -0.35
NEDD9-215ENST00000514660 TMEM63BQ5T3F8 832 aa12.87□□□□□ -0.35
NEDD9-215ENST00000514660 CXCL17Q6UXB2 119 aa12.87□□□□□ -0.35
NEDD9-215ENST00000514660 MAMDC4Q6UXC1 1216 aa12.87□□□□□ -0.35
NEDD9-215ENST00000514660 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.87□□□□□ -0.35
NEDD9-215ENST00000514660 UIMC1Q96RL1 719 aa12.87□□□□□ -0.35
NEDD9-215ENST00000514660 CNPY2Q9Y2B0 182 aa12.87□□□□□ -0.35
NEDD9-215ENST00000514660 ZBBXA8MT70 800 aa12.86□□□□□ -0.35
NEDD9-215ENST00000514660 GTPBP6O43824 516 aaPredicted RBP12.86□□□□□ -0.35
NEDD9-215ENST00000514660 ACVR2BQ13705 512 aa12.86□□□□□ -0.35
NEDD9-215ENST00000514660 KCTD2Q14681 263 aa12.86□□□□□ -0.35
NEDD9-215ENST00000514660 CCDC144BQ3MJ40 725 aa12.86□□□□□ -0.35
NEDD9-215ENST00000514660 TMEM67Q5HYA8 995 aa12.86□□□□□ -0.35
NEDD9-215ENST00000514660 GJD3Q8N144 294 aa12.86□□□□□ -0.35
NEDD9-215ENST00000514660 RIOK1Q9BRS2 568 aaKnown RBP12.86□□□□□ -0.35
NEDD9-215ENST00000514660 ANTXR1Q9H6X2 564 aa12.86□□□□□ -0.35
NEDD9-215ENST00000514660 VCPKMTQ9H867 229 aa12.86□□□□□ -0.35
NEDD9-215ENST00000514660 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.86□□□□□ -0.35
NEDD9-215ENST00000514660 TMX2Q9Y320 296 aa12.86□□□□□ -0.35
NEDD9-215ENST00000514660 DDX49Q9Y6V7 483 aaKnown RBP12.86□□□□□ -0.35
NEDD9-215ENST00000514660 LCHNA4D1U4 455 aa12.85□□□□□ -0.35
NEDD9-215ENST00000514660 VWA5AO00534 786 aa12.85□□□□□ -0.35
NEDD9-215ENST00000514660 MPHOSPH10O00566 681 aaKnown RBP12.85□□□□□ -0.35
NEDD9-215ENST00000514660 TLR3O15455 904 aaKnown RBP12.85□□□□□ -0.35
NEDD9-215ENST00000514660 AKR1B1P15121 316 aa12.85□□□□□ -0.35
NEDD9-215ENST00000514660 STAT3P40763 770 aa12.85□□□□□ -0.35
NEDD9-215ENST00000514660 TTC6Q86TZ1 520 aa12.85□□□□□ -0.35
NEDD9-215ENST00000514660 PCSK9Q8NBP7 692 aaKnown RBP12.85□□□□□ -0.35
NEDD9-215ENST00000514660 DYNLL2Q96FJ2 89 aa12.85□□□□□ -0.35
NEDD9-215ENST00000514660 MTIF3Q9H2K0 278 aaKnown RBP12.85□□□□□ -0.35
NEDD9-215ENST00000514660 TLR7Q9NYK1 1049 aaKnown RBP12.85□□□□□ -0.35
NEDD9-215ENST00000514660 MYH8P13535 1937 aa12.85□□□□□ -0.35
NEDD9-215ENST00000514660 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.84□□□□□ -0.35
NEDD9-215ENST00000514660 POTEB3A0JP26 581 aa12.84□□□□□ -0.35
NEDD9-215ENST00000514660 PSMC6P62333 389 aa12.84□□□□□ -0.35
NEDD9-215ENST00000514660 ITGA7Q13683 1181 aa12.84□□□□□ -0.35
NEDD9-215ENST00000514660 POTEBQ6S5H4 581 aa12.84□□□□□ -0.35
NEDD9-215ENST00000514660 TMCO2Q7Z6W1 182 aaPredicted RBP12.84□□□□□ -0.35
NEDD9-215ENST00000514660 MAGEB6Q8N7X4 407 aa12.84□□□□□ -0.35
NEDD9-215ENST00000514660 MRS2Q9HD23 443 aa12.84□□□□□ -0.35
NEDD9-215ENST00000514660 NOB1Q9ULX3 412 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms