RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 INF2Q27J81 1249 aa9.31□□□□□ -0.92
CPNE4-211ENST00000514439 PDXDC2PQ6P474 469 aa9.31□□□□□ -0.92
CPNE4-211ENST00000514439 HOMER1Q86YM7 354 aa9.31□□□□□ -0.92
CPNE4-211ENST00000514439 TSC1Q92574 1164 aa9.31□□□□□ -0.92
CPNE4-211ENST00000514439 STAMQ92783 540 aa9.31□□□□□ -0.92
CPNE4-211ENST00000514439 PYM1Q9BRP8 204 aaKnown RBP9.31□□□□□ -0.92
CPNE4-211ENST00000514439 ZMYND12Q9H0C1 365 aa9.31□□□□□ -0.92
CPNE4-211ENST00000514439 TRMT1Q9NXH9 659 aaKnown RBP9.31□□□□□ -0.92
CPNE4-211ENST00000514439 ZNF219Q9P2Y4 722 aaPredicted RBP9.31□□□□□ -0.92
CPNE4-211ENST00000514439 TTF2Q9UNY4 1162 aaKnown RBP9.31□□□□□ -0.92
CPNE4-211ENST00000514439 RRP9O43818 475 aaKnown RBP9.3□□□□□ -0.92
CPNE4-211ENST00000514439 MYCNP04198 464 aaPredicted RBP9.3□□□□□ -0.92
CPNE4-211ENST00000514439 CD44P16070 742 aaKnown RBP9.3□□□□□ -0.92
CPNE4-211ENST00000514439 ALDH1B1P30837 517 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 PDE6BP35913 854 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 SCNN1DP51172 638 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 CUL4BQ13620 913 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 E4F1Q66K89 784 aaPredicted RBP9.3□□□□□ -0.92
CPNE4-211ENST00000514439 NYAP1Q6ZVC0 841 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 FAM177A1Q8N128 213 aaPredicted RBP9.3□□□□□ -0.92
CPNE4-211ENST00000514439 RRP36Q96EU6 259 aaKnown RBP9.3□□□□□ -0.92
CPNE4-211ENST00000514439 MTRQ99707 1265 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 SAMSN1Q9NSI8 373 aaKnown RBP9.3□□□□□ -0.92
CPNE4-211ENST00000514439 FOCADQ5VW36 1801 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 USP17L5A8MUK1 530 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 NRDCO43847 1150 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 APBA3O96018 575 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 AKR1B1P15121 316 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 CDK11BP21127 795 aaKnown RBP9.3□□□□□ -0.92
CPNE4-211ENST00000514439 CDC25AP30304 524 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 CT47A1Q5JQC4 288 aaPredicted RBP9.3□□□□□ -0.92
CPNE4-211ENST00000514439 CEP135Q66GS9 1140 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 KLHL10Q6JEL2 608 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 SMYD4Q8IYR2 804 aaPredicted RBP9.3□□□□□ -0.92
CPNE4-211ENST00000514439 CCDC12Q8WUD4 166 aaPredicted RBP9.3□□□□□ -0.92
CPNE4-211ENST00000514439 BLZF1Q9H2G9 400 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 TMEM60Q9H2L4 133 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 MTMR4Q9NYA4 1195 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 SEC63Q9UGP8 760 aaKnown RBP9.3□□□□□ -0.92
CPNE4-211ENST00000514439 PARP3Q9Y6F1 533 aa9.3□□□□□ -0.92
CPNE4-211ENST00000514439 COL11A2P13942 1736 aaPredicted RBP9.29□□□□□ -0.92
CPNE4-211ENST00000514439 QSER1Q2KHR3 1735 aa9.29□□□□□ -0.92
CPNE4-211ENST00000514439 SYNRGQ9UMZ2 1314 aa9.29□□□□□ -0.92
CPNE4-211ENST00000514439 PDHBP11177 359 aa9.29□□□□□ -0.92
CPNE4-211ENST00000514439 SMARCA1P28370 1054 aa9.29□□□□□ -0.92
CPNE4-211ENST00000514439 TXLNAP40222 546 aa9.29□□□□□ -0.92
CPNE4-211ENST00000514439 KCNJ6P48051 423 aa9.29□□□□□ -0.92
CPNE4-211ENST00000514439 STX17P56962 302 aa9.29□□□□□ -0.92
CPNE4-211ENST00000514439 HSP90AA2PQ14568 343 aaPredicted RBP9.29□□□□□ -0.92
CPNE4-211ENST00000514439 KARSQ15046 597 aaKnown RBP9.29□□□□□ -0.92
CPNE4-211ENST00000514439 PTPN14Q15678 1187 aa9.29□□□□□ -0.92
CPNE4-211ENST00000514439 MSL1Q68DK7 614 aa9.29□□□□□ -0.92
CPNE4-211ENST00000514439 CLEC10AQ8IUN9 316 aa9.29□□□□□ -0.92
CPNE4-211ENST00000514439 MASTLQ96GX5 879 aa9.29□□□□□ -0.92
CPNE4-211ENST00000514439 PIGSQ96S52 555 aa9.29□□□□□ -0.92
CPNE4-211ENST00000514439 USP40Q9NVE5 1235 aa9.29□□□□□ -0.92
CPNE4-211ENST00000514439 IGKV6D-41A0A0C4DH26 115 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 SMCO2A6NFE2 343 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 PPP1R3GB7ZBB8 358 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 G3V3G9 751 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 GTPBP6O43824 516 aaPredicted RBP9.28□□□□□ -0.92
CPNE4-211ENST00000514439 EIF6P56537 245 aaKnown RBP9.28□□□□□ -0.92
CPNE4-211ENST00000514439 GOLGA8FQ08AF8 430 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 GOLGA8DPQ0D2H9 430 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 DCAF8Q5TAQ9 597 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 SPATA1Q5VX52 437 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 DTHD1Q6ZMT9 781 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 KRT25Q7Z3Z0 450 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 LRRC47Q8N1G4 583 aaKnown RBP9.28□□□□□ -0.92
CPNE4-211ENST00000514439 FLAD1Q8NFF5 587 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 ZNF592Q92610 1267 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 UBA5Q9GZZ9 404 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 TMX4Q9H1E5 349 aaPredicted RBP9.28□□□□□ -0.92
CPNE4-211ENST00000514439 VAT1LQ9HCJ6 419 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 C6orf50Q9HD87 102 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 DISC1Q9NRI5 854 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 SERPINB13Q9UIV8 391 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 PAXBP1Q9Y5B6 917 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 FRMPD2Q68DX3 1309 aaPredicted RBP9.28□□□□□ -0.92
CPNE4-211ENST00000514439 PSDA5PKW4 1024 aaPredicted RBP9.28□□□□□ -0.92
CPNE4-211ENST00000514439 PP2D1A8MPX8 630 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 GNA11P29992 359 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 STAT6P42226 847 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 NONOQ15233 471 aaKnown RBP eCLIP9.28□□□□□ -0.92
CPNE4-211ENST00000514439 APOBEC3HQ6NTF7 200 aaKnown RBP9.28□□□□□ -0.92
CPNE4-211ENST00000514439 CDC42EP5Q6NZY7 148 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 HHIPL2Q6UWX4 724 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 CCDC112Q8NEF3 446 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 ZNF622Q969S3 477 aaKnown RBP eCLIP9.28□□□□□ -0.92
CPNE4-211ENST00000514439 TEKT1Q969V4 418 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 PPP1R13BQ96KQ4 1090 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 TMX1Q9H3N1 280 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 RIOX1Q9H6W3 641 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 SWAP70Q9UH65 585 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 ADAMTSL1Q8N6G6 1762 aa9.28□□□□□ -0.92
CPNE4-211ENST00000514439 A0A1B0GTH6 734 aa9.27□□□□□ -0.92
CPNE4-211ENST00000514439 LAD1O00515 517 aa9.27□□□□□ -0.92
CPNE4-211ENST00000514439 SNHG28P0DPA3 235 aa9.27□□□□□ -0.92
CPNE4-211ENST00000514439 SHMT1P34896 483 aa9.27□□□□□ -0.92
CPNE4-211ENST00000514439 PRPHP41219 470 aa9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms