RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 KCNG4Q8TDN1 519 aa18.37■□□□□ 0.53
NUP54-214ENST00000514307 ACER1Q8TDN7 264 aa18.37■□□□□ 0.53
NUP54-214ENST00000514307 LPAR1Q92633 364 aa18.37■□□□□ 0.53
NUP54-214ENST00000514307 CHAMP1Q96JM3 812 aa18.37■□□□□ 0.53
NUP54-214ENST00000514307 FEZ1Q99689 392 aa18.37■□□□□ 0.53
NUP54-214ENST00000514307 WDR18Q9BV38 432 aa18.37■□□□□ 0.53
NUP54-214ENST00000514307 KIAA1683Q9H0B3 1180 aa18.37■□□□□ 0.53
NUP54-214ENST00000514307 SMCO2A6NFE2 343 aa18.36■□□□□ 0.53
NUP54-214ENST00000514307 KIF28PB7ZC32 967 aa18.36■□□□□ 0.53
NUP54-214ENST00000514307 STXBP3O00186 592 aa18.36■□□□□ 0.53
NUP54-214ENST00000514307 MRPL12P52815 198 aaKnown RBP18.36■□□□□ 0.53
NUP54-214ENST00000514307 MAP3K9P80192 1104 aa18.36■□□□□ 0.53
NUP54-214ENST00000514307 CEBPZQ03701 1054 aaKnown RBP18.36■□□□□ 0.53
NUP54-214ENST00000514307 MCTP2Q6DN12 878 aa18.36■□□□□ 0.53
NUP54-214ENST00000514307 PPP1R18Q6NYC8 613 aa18.36■□□□□ 0.53
NUP54-214ENST00000514307 ZNF784Q8NCA9 323 aaPredicted RBP18.36■□□□□ 0.53
NUP54-214ENST00000514307 DAGLBQ8NCG7 672 aa18.36■□□□□ 0.53
NUP54-214ENST00000514307 MTMR8Q96EF0 704 aa18.36■□□□□ 0.53
NUP54-214ENST00000514307 USP28Q96RU2 1077 aa18.36■□□□□ 0.53
NUP54-214ENST00000514307 WRNIP1Q96S55 665 aa18.36■□□□□ 0.53
NUP54-214ENST00000514307 TAF1DQ9H5J8 278 aaPredicted RBP18.36■□□□□ 0.53
NUP54-214ENST00000514307 FEM1BQ9UK73 627 aa18.36■□□□□ 0.53
NUP54-214ENST00000514307 DICER1Q9UPY3 1922 aaKnown RBP18.35■□□□□ 0.53
NUP54-214ENST00000514307 ESYT2A0FGR8 921 aa18.35■□□□□ 0.53
NUP54-214ENST00000514307 C19orf81C9J6K1 198 aa18.35■□□□□ 0.53
NUP54-214ENST00000514307 USP17L10C9JJH3 530 aa18.35■□□□□ 0.53
NUP54-214ENST00000514307 BMP15O95972 392 aa18.35■□□□□ 0.53
NUP54-214ENST00000514307 SLC16A2P36021 539 aa18.35■□□□□ 0.53
NUP54-214ENST00000514307 TRAPPC10P48553 1259 aa18.35■□□□□ 0.53
NUP54-214ENST00000514307 NASPP49321 788 aaPredicted RBP18.35■□□□□ 0.53
NUP54-214ENST00000514307 SLC39A14Q15043 492 aa18.35■□□□□ 0.53
NUP54-214ENST00000514307 SLC35G1Q2M3R5 365 aa18.35■□□□□ 0.53
NUP54-214ENST00000514307 SYDE2Q5VT97 1194 aa18.35■□□□□ 0.53
NUP54-214ENST00000514307 PRAMEF18Q5VWM3 479 aa18.35■□□□□ 0.53
NUP54-214ENST00000514307 WWC2Q6AWC2 1192 aa18.35■□□□□ 0.53
NUP54-214ENST00000514307 TEX2Q8IWB9 1127 aa18.35■□□□□ 0.53
NUP54-214ENST00000514307 KLRG1Q96E93 195 aa18.35■□□□□ 0.53
NUP54-214ENST00000514307 ZMYND12Q9H0C1 365 aa18.35■□□□□ 0.53
NUP54-214ENST00000514307 SPTLC2O15270 562 aa18.34■□□□□ 0.53
NUP54-214ENST00000514307 USP2O75604 605 aaPredicted RBP18.34■□□□□ 0.53
NUP54-214ENST00000514307 ECE1P42892 770 aa18.34■□□□□ 0.53
NUP54-214ENST00000514307 ME1P48163 572 aa18.34■□□□□ 0.53
NUP54-214ENST00000514307 IREB2P48200 963 aaKnown RBP18.34■□□□□ 0.53
NUP54-214ENST00000514307 STAT2P52630 851 aa18.34■□□□□ 0.53
NUP54-214ENST00000514307 NOL9Q5SY16 702 aaKnown RBP18.34■□□□□ 0.53
NUP54-214ENST00000514307 LINC00301Q8NCQ3 95 aa18.34■□□□□ 0.53
NUP54-214ENST00000514307 GPKOWQ92917 476 aaPredicted RBP eCLIP18.34■□□□□ 0.53
NUP54-214ENST00000514307 CPVLQ9H3G5 476 aa18.34■□□□□ 0.53
NUP54-214ENST00000514307 SBF1O95248 1867 aa18.34■□□□□ 0.53
NUP54-214ENST00000514307 CCDC194A0A1B0GVG4 234 aa18.33■□□□□ 0.52
NUP54-214ENST00000514307 TRIM75PA6NK02 468 aa18.33■□□□□ 0.52
NUP54-214ENST00000514307 GADD45BO75293 160 aaPredicted RBP18.33■□□□□ 0.52
NUP54-214ENST00000514307 LETM1O95202 739 aaPredicted RBP18.33■□□□□ 0.52
NUP54-214ENST00000514307 INPP5BP32019 993 aa18.33■□□□□ 0.52
NUP54-214ENST00000514307 NR5A1Q13285 461 aa18.33■□□□□ 0.52
NUP54-214ENST00000514307 EAPPQ56P03 285 aaPredicted RBP18.33■□□□□ 0.52
NUP54-214ENST00000514307 KRT25Q7Z3Z0 450 aa18.33■□□□□ 0.52
NUP54-214ENST00000514307 ZNF280CQ8ND82 737 aa18.33■□□□□ 0.52
NUP54-214ENST00000514307 OXER1Q8TDS5 423 aa18.33■□□□□ 0.52
NUP54-214ENST00000514307 ZNF526Q8TF50 670 aaPredicted RBP18.33■□□□□ 0.52
NUP54-214ENST00000514307 AMNQ9BXJ7 453 aa18.33■□□□□ 0.52
NUP54-214ENST00000514307 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.33■□□□□ 0.52
NUP54-214ENST00000514307 PNMA2Q9UL42 364 aa18.33■□□□□ 0.52
NUP54-214ENST00000514307 CLEC11AQ9Y240 323 aa18.33■□□□□ 0.52
NUP54-214ENST00000514307 CSADQ9Y600 493 aa18.33■□□□□ 0.52
NUP54-214ENST00000514307 CLIC4Q9Y696 253 aa18.33■□□□□ 0.52
NUP54-214ENST00000514307 WDR46O15213 610 aaKnown RBP18.32■□□□□ 0.52
NUP54-214ENST00000514307 PPP6R2O75170 966 aa18.32■□□□□ 0.52
NUP54-214ENST00000514307 FDX1P10109 184 aa18.32■□□□□ 0.52
NUP54-214ENST00000514307 VEGFAP15692 232 aaPredicted RBP18.32■□□□□ 0.52
NUP54-214ENST00000514307 PTPRAP18433 802 aa18.32■□□□□ 0.52
NUP54-214ENST00000514307 ADALQ6DHV7 355 aa18.32■□□□□ 0.52
NUP54-214ENST00000514307 FBXO11Q86XK2 927 aa18.32■□□□□ 0.52
NUP54-214ENST00000514307 SPICE1Q8N0Z3 855 aa18.32■□□□□ 0.52
NUP54-214ENST00000514307 RBM46Q8TBY0 533 aaKnown RBP18.32■□□□□ 0.52
NUP54-214ENST00000514307 ADCY7P51828 1080 aa18.31■□□□□ 0.52
NUP54-214ENST00000514307 BACE1P56817 501 aa18.31■□□□□ 0.52
NUP54-214ENST00000514307 SPP2Q13103 211 aa18.31■□□□□ 0.52
NUP54-214ENST00000514307 FAM83BQ5T0W9 1011 aa18.31■□□□□ 0.52
NUP54-214ENST00000514307 RASGRP2Q7LDG7 609 aa18.31■□□□□ 0.52
NUP54-214ENST00000514307 PRPF38AQ8NAV1 312 aaKnown RBP18.31■□□□□ 0.52
NUP54-214ENST00000514307 GPT2Q8TD30 523 aa18.31■□□□□ 0.52
NUP54-214ENST00000514307 ZKSCAN4Q969J2 545 aaPredicted RBP18.31■□□□□ 0.52
NUP54-214ENST00000514307 NUP88Q99567 741 aaPredicted RBP18.31■□□□□ 0.52
NUP54-214ENST00000514307 PSTPIP2Q9H939 334 aa18.31■□□□□ 0.52
NUP54-214ENST00000514307 PCDHA1Q9Y5I3 950 aa18.31■□□□□ 0.52
NUP54-214ENST00000514307 ZHX2Q9Y6X8 837 aa18.31■□□□□ 0.52
NUP54-214ENST00000514307 ZYXQ15942 572 aaKnown RBP18.3■□□□□ 0.52
NUP54-214ENST00000514307 CDC37Q16543 378 aaPredicted RBP18.3■□□□□ 0.52
NUP54-214ENST00000514307 QRICH1Q2TAL8 776 aa18.3■□□□□ 0.52
NUP54-214ENST00000514307 ARMC9Q7Z3E5 817 aa18.3■□□□□ 0.52
NUP54-214ENST00000514307 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.3■□□□□ 0.52
NUP54-214ENST00000514307 CUL5Q93034 780 aa18.3■□□□□ 0.52
NUP54-214ENST00000514307 TNFRSF25Q93038 417 aa18.3■□□□□ 0.52
NUP54-214ENST00000514307 COA7Q96BR5 231 aa18.3■□□□□ 0.52
NUP54-214ENST00000514307 RIC8AQ9NPQ8 531 aa18.3■□□□□ 0.52
NUP54-214ENST00000514307 TMOD4Q9NZQ9 345 aa18.3■□□□□ 0.52
NUP54-214ENST00000514307 PRR12Q9ULL5 1215 aa18.3■□□□□ 0.52
NUP54-214ENST00000514307 PCDHA6Q9UN73 950 aa18.3■□□□□ 0.52
NUP54-214ENST00000514307 PCDHA8Q9Y5H6 950 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms