RNA–Protein interactions for RNA: ENST00000513989.5

NEDD9-214, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 4

Gene NEDD9, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-214ENST00000513989 ADGRA2Q96PE1 1338 aa11.82□□□□□ -0.52
NEDD9-214ENST00000513989 MYH1P12882 1939 aa11.82□□□□□ -0.52
NEDD9-214ENST00000513989 GOLGA8AA7E2F4 631 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 USP17L15C9J2P7 530 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 USP17L13C9JLJ4 530 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 USP17L11C9JVI0 530 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 USP17L18D6R9N7 530 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 USP17L22D6RA61 530 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 USP17L17D6RBQ6 530 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 USP17L19D6RCP7 530 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 USP17L20D6RJB6 530 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 CDKL5O76039 1030 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 NDUFB10O96000 172 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 PDHBP11177 359 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 OSBPP22059 807 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 CTGFP29279 349 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 USP17L24Q0WX57 530 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 TROAPQ12815 778 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 IKQ13123 557 aaPredicted RBP11.81□□□□□ -0.52
NEDD9-214ENST00000513989 APOA5Q6Q788 366 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 GADL1Q6ZQY3 521 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 NOL8Q76FK4 1167 aaKnown RBP11.81□□□□□ -0.52
NEDD9-214ENST00000513989 MICU3Q86XE3 530 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 SPICE1Q8N0Z3 855 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 ZNF333Q96JL9 665 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 C12orf42Q96LP6 360 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 LARP6Q9BRS8 491 aaKnown RBP11.81□□□□□ -0.52
NEDD9-214ENST00000513989 SENP2Q9HC62 589 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 EMILIN3Q9NT22 766 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 FEM1BQ9UK73 627 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 BRPF3Q9ULD4 1205 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 TPCN1Q9ULQ1 816 aa11.81□□□□□ -0.52
NEDD9-214ENST00000513989 CTDP1Q9Y5B0 961 aaPredicted RBP11.81□□□□□ -0.52
NEDD9-214ENST00000513989 BAZ2AQ9UIF9 1905 aaKnown RBP11.8□□□□□ -0.52
NEDD9-214ENST00000513989 LOC285556D6RIA3 1793 aa11.8□□□□□ -0.52
NEDD9-214ENST00000513989 TLR2O60603 784 aa11.8□□□□□ -0.52
NEDD9-214ENST00000513989 PLA2G6O60733 806 aa11.8□□□□□ -0.52
NEDD9-214ENST00000513989 PFKFB2O60825 505 aa11.8□□□□□ -0.52
NEDD9-214ENST00000513989 EN2P19622 333 aaPredicted RBP11.8□□□□□ -0.52
NEDD9-214ENST00000513989 SMARCA1P28370 1054 aa11.8□□□□□ -0.52
NEDD9-214ENST00000513989 AKAP17AQ02040 695 aaKnown RBP11.8□□□□□ -0.52
NEDD9-214ENST00000513989 STK3Q13188 491 aa11.8□□□□□ -0.52
NEDD9-214ENST00000513989 COL9A3Q14050 684 aaPredicted RBP11.8□□□□□ -0.52
NEDD9-214ENST00000513989 GRM4Q14833 912 aa11.8□□□□□ -0.52
NEDD9-214ENST00000513989 FAM160B2Q86V87 743 aa11.8□□□□□ -0.52
NEDD9-214ENST00000513989 TANGO6Q9C0B7 1094 aa11.8□□□□□ -0.52
NEDD9-214ENST00000513989 ZFYVE28Q9HCC9 887 aa11.8□□□□□ -0.52
NEDD9-214ENST00000513989 PNMA3Q9UL41 463 aa11.8□□□□□ -0.52
NEDD9-214ENST00000513989 PTCH2Q9Y6C5 1203 aa11.8□□□□□ -0.52
NEDD9-214ENST00000513989 PALM3A6NDB9 673 aaPredicted RBP11.79□□□□□ -0.52
NEDD9-214ENST00000513989 TMEM232C9JQI7 657 aa11.79□□□□□ -0.52
NEDD9-214ENST00000513989 KLRF2D3W0D1 207 aa11.79□□□□□ -0.52
NEDD9-214ENST00000513989 HSP90AA1P07900 732 aaKnown RBP11.79□□□□□ -0.52
NEDD9-214ENST00000513989 SNHG28P0DPA3 235 aa11.79□□□□□ -0.52
NEDD9-214ENST00000513989 FDX1P10109 184 aa11.79□□□□□ -0.52
NEDD9-214ENST00000513989 VCAM1P19320 739 aa11.79□□□□□ -0.52
NEDD9-214ENST00000513989 HOXA7P31268 230 aaPredicted RBP11.79□□□□□ -0.52
NEDD9-214ENST00000513989 STAT2P52630 851 aa11.79□□□□□ -0.52
NEDD9-214ENST00000513989 CCT2P78371 535 aaKnown RBP11.79□□□□□ -0.52
NEDD9-214ENST00000513989 LACTBP83111 547 aaPredicted RBP11.79□□□□□ -0.52
NEDD9-214ENST00000513989 ZNF543Q08ER8 600 aa11.79□□□□□ -0.52
NEDD9-214ENST00000513989 COG2Q14746 738 aa11.79□□□□□ -0.52
NEDD9-214ENST00000513989 FAM83BQ5T0W9 1011 aa11.79□□□□□ -0.52
NEDD9-214ENST00000513989 KCTD1Q719H9 257 aa11.79□□□□□ -0.52
NEDD9-214ENST00000513989 PRPF38AQ8NAV1 312 aaKnown RBP11.79□□□□□ -0.52
NEDD9-214ENST00000513989 MYL10Q9BUA6 226 aa11.79□□□□□ -0.52
NEDD9-214ENST00000513989 RNF39Q9H2S5 420 aa11.79□□□□□ -0.52
NEDD9-214ENST00000513989 RPAP3Q9H6T3 665 aaPredicted RBP11.79□□□□□ -0.52
NEDD9-214ENST00000513989 ZCCHC17Q9NP64 241 aaKnown RBP11.79□□□□□ -0.52
NEDD9-214ENST00000513989 GPCPD1Q9NPB8 672 aa11.79□□□□□ -0.52
NEDD9-214ENST00000513989 PNMA2Q9UL42 364 aa11.79□□□□□ -0.52
NEDD9-214ENST00000513989 AGTPBP1Q9UPW5 1226 aa11.79□□□□□ -0.52
NEDD9-214ENST00000513989 SLC45A1Q9Y2W3 748 aa11.79□□□□□ -0.52
NEDD9-214ENST00000513989 DDX60LQ5H9U9 1706 aaKnown RBP11.78□□□□□ -0.52
NEDD9-214ENST00000513989 ZBED4O75132 1171 aa11.78□□□□□ -0.52
NEDD9-214ENST00000513989 FLOT1O75955 427 aa11.78□□□□□ -0.52
NEDD9-214ENST00000513989 IRX3P78415 501 aaPredicted RBP11.78□□□□□ -0.52
NEDD9-214ENST00000513989 TRAF1Q13077 416 aa11.78□□□□□ -0.52
NEDD9-214ENST00000513989 ME3Q16798 604 aa11.78□□□□□ -0.52
NEDD9-214ENST00000513989 C17orf99Q6UX52 265 aa11.78□□□□□ -0.52
NEDD9-214ENST00000513989 CATSPERGQ6ZRH7 1159 aa11.78□□□□□ -0.52
NEDD9-214ENST00000513989 ANKRD23Q86SG2 305 aa11.78□□□□□ -0.52
NEDD9-214ENST00000513989 CCDC144CPQ8IYA2 1237 aa11.78□□□□□ -0.52
NEDD9-214ENST00000513989 TRIM22Q8IYM9 498 aa11.78□□□□□ -0.52
NEDD9-214ENST00000513989 GTF3C2Q8WUA4 911 aaPredicted RBP11.78□□□□□ -0.52
NEDD9-214ENST00000513989 TMX3Q96JJ7 454 aa11.78□□□□□ -0.52
NEDD9-214ENST00000513989 RBM27Q9P2N5 1060 aaKnown RBP11.78□□□□□ -0.52
NEDD9-214ENST00000513989 MAD2L2Q9UI95 211 aa11.78□□□□□ -0.52
NEDD9-214ENST00000513989 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.78□□□□□ -0.52
NEDD9-214ENST00000513989 ALPK3Q96L96 1907 aa11.78□□□□□ -0.52
NEDD9-214ENST00000513989 K7ELQ4 463 aaPredicted RBP11.77□□□□□ -0.53
NEDD9-214ENST00000513989 GOLGA8HP0CJ92 632 aa11.77□□□□□ -0.53
NEDD9-214ENST00000513989 RXRAP19793 462 aa11.77□□□□□ -0.53
NEDD9-214ENST00000513989 ADD1P35611 737 aaKnown RBP11.77□□□□□ -0.53
NEDD9-214ENST00000513989 SSRP1Q08945 709 aaKnown RBP11.77□□□□□ -0.53
NEDD9-214ENST00000513989 SYDE2Q5VT97 1194 aa11.77□□□□□ -0.53
NEDD9-214ENST00000513989 BTNL9Q6UXG8 535 aa11.77□□□□□ -0.53
NEDD9-214ENST00000513989 RAB11FIP4Q86YS3 637 aa11.77□□□□□ -0.53
NEDD9-214ENST00000513989 GTF3C6Q969F1 213 aa11.77□□□□□ -0.53
NEDD9-214ENST00000513989 RRP36Q96EU6 259 aaKnown RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms