RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 CPVLQ9H3G5 476 aa34.52■■■■□ 3.12
LIMCH1-211ENST00000509638 SAGE1Q9NXZ1 904 aa34.52■■■■□ 3.12
LIMCH1-211ENST00000509638 PALM3A6NDB9 673 aaPredicted RBP34.51■■■■□ 3.12
LIMCH1-211ENST00000509638 PLA2G6O60733 806 aa34.51■■■■□ 3.12
LIMCH1-211ENST00000509638 KIF5BP33176 963 aa34.51■■■■□ 3.12
LIMCH1-211ENST00000509638 PRPF38AQ8NAV1 312 aaKnown RBP34.51■■■■□ 3.12
LIMCH1-211ENST00000509638 WBP1LQ9NX94 342 aa34.51■■■■□ 3.12
LIMCH1-211ENST00000509638 NID2Q14112 1375 aa34.51■■■■□ 3.11
LIMCH1-211ENST00000509638 METAP2P50579 478 aaKnown RBP eCLIP34.5■■■■□ 3.11
LIMCH1-211ENST00000509638 BTNL9Q6UXG8 535 aa34.5■■■■□ 3.11
LIMCH1-211ENST00000509638 FANCBQ8NB91 859 aa34.5■■■■□ 3.11
LIMCH1-211ENST00000509638 HOXC10Q9NYD6 342 aa34.5■■■■□ 3.11
LIMCH1-211ENST00000509638 HPS5Q9UPZ3 1129 aa34.5■■■■□ 3.11
LIMCH1-211ENST00000509638 MYH6P13533 1939 aa34.5■■■■□ 3.11
LIMCH1-211ENST00000509638 BAZ2BQ9UIF8 2168 aaKnown RBP34.49■■■■□ 3.11
LIMCH1-211ENST00000509638 KLRF2D3W0D1 207 aa34.49■■■■□ 3.11
LIMCH1-211ENST00000509638 ST18O60284 1047 aa34.49■■■■□ 3.11
LIMCH1-211ENST00000509638 TBC1D8O95759 1140 aa34.49■■■■□ 3.11
LIMCH1-211ENST00000509638 RTN1Q16799 776 aa34.49■■■■□ 3.11
LIMCH1-211ENST00000509638 SYDE2Q5VT97 1194 aa34.49■■■■□ 3.11
LIMCH1-211ENST00000509638 LBX2Q6XYB7 198 aa34.49■■■■□ 3.11
LIMCH1-211ENST00000509638 CFHR5Q9BXR6 569 aa34.49■■■■□ 3.11
LIMCH1-211ENST00000509638 PRR12Q9ULL5 1215 aa34.49■■■■□ 3.11
LIMCH1-211ENST00000509638 TPCN1Q9ULQ1 816 aa34.49■■■■□ 3.11
LIMCH1-211ENST00000509638 TLR2O60603 784 aa34.49■■■■□ 3.11
LIMCH1-211ENST00000509638 PDIA3P30101 505 aaKnown RBP34.49■■■■□ 3.11
LIMCH1-211ENST00000509638 UBA5Q9GZZ9 404 aa34.49■■■■□ 3.11
LIMCH1-211ENST00000509638 R3HDMLQ9H3Y0 253 aa34.49■■■■□ 3.11
LIMCH1-211ENST00000509638 POTEEQ6S8J3 1075 aa34.48■■■■□ 3.11
LIMCH1-211ENST00000509638 GTF3C2Q8WUA4 911 aaPredicted RBP34.48■■■■□ 3.11
LIMCH1-211ENST00000509638 VWA5AO00534 786 aa34.47■■■■□ 3.11
LIMCH1-211ENST00000509638 GCLCP48506 637 aaPredicted RBP34.47■■■■□ 3.11
LIMCH1-211ENST00000509638 ZNF274Q96GC6 653 aaPredicted RBP34.47■■■■□ 3.11
LIMCH1-211ENST00000509638 PAGR1Q9BTK6 254 aa34.47■■■■□ 3.11
LIMCH1-211ENST00000509638 CPA4Q9UI42 421 aa34.47■■■■□ 3.11
LIMCH1-211ENST00000509638 PLEKHA8P1O95397 391 aa34.46■■■■□ 3.11
LIMCH1-211ENST00000509638 RBM28Q9NW13 759 aaKnown RBP34.46■■■■□ 3.11
LIMCH1-211ENST00000509638 ADAMTS5Q9UNA0 930 aa34.46■■■■□ 3.11
LIMCH1-211ENST00000509638 PEX10O60683 326 aa34.45■■■■□ 3.11
LIMCH1-211ENST00000509638 STK3Q13188 491 aa34.45■■■■□ 3.11
LIMCH1-211ENST00000509638 ANKRD13CQ8N6S4 541 aa34.45■■■■□ 3.11
LIMCH1-211ENST00000509638 TXNRD2Q9NNW7 524 aa34.45■■■■□ 3.11
LIMCH1-211ENST00000509638 DHX16O60231 1041 aaKnown RBP34.45■■■■□ 3.1
LIMCH1-211ENST00000509638 TMTC3Q6ZXV5 915 aa34.45■■■■□ 3.1
LIMCH1-211ENST00000509638 MB21D1Q8N884 522 aa34.45■■■■□ 3.1
LIMCH1-211ENST00000509638 TSKSQ9UJT2 592 aa34.45■■■■□ 3.1
LIMCH1-211ENST00000509638 CDC27P30260 824 aa34.44■■■■□ 3.1
LIMCH1-211ENST00000509638 GNAQP50148 359 aa34.44■■■■□ 3.1
LIMCH1-211ENST00000509638 CCT2P78371 535 aaKnown RBP34.44■■■■□ 3.1
LIMCH1-211ENST00000509638 SLC35G1Q2M3R5 365 aa34.44■■■■□ 3.1
LIMCH1-211ENST00000509638 NBPF11Q86T75 865 aa34.44■■■■□ 3.1
LIMCH1-211ENST00000509638 ADGRF4Q8IZF3 695 aa34.44■■■■□ 3.1
LIMCH1-211ENST00000509638 IL27Q8NEV9 243 aa34.44■■■■□ 3.1
LIMCH1-211ENST00000509638 SLC38A10Q9HBR0 1119 aa34.44■■■■□ 3.1
LIMCH1-211ENST00000509638 NCOA5Q9HCD5 579 aaKnown RBP34.44■■■■□ 3.1
LIMCH1-211ENST00000509638 FAM217BQ9NTX9 383 aaPredicted RBP34.44■■■■□ 3.1
LIMCH1-211ENST00000509638 CD2BP2O95400 341 aaKnown RBP34.43■■■■□ 3.1
LIMCH1-211ENST00000509638 LARGE1O95461 756 aa34.43■■■■□ 3.1
LIMCH1-211ENST00000509638 BCRP11274 1271 aa34.43■■■■□ 3.1
LIMCH1-211ENST00000509638 SNAP25P60880 206 aa34.43■■■■□ 3.1
LIMCH1-211ENST00000509638 C17orf99Q6UX52 265 aa34.43■■■■□ 3.1
LIMCH1-211ENST00000509638 CMTR1Q8N1G2 835 aaKnown RBP34.43■■■■□ 3.1
LIMCH1-211ENST00000509638 BTBD7Q9P203 1132 aa34.43■■■■□ 3.1
LIMCH1-211ENST00000509638 RBPJLQ9UBG7 517 aa34.43■■■■□ 3.1
LIMCH1-211ENST00000509638 RABGAP1Q9Y3P9 1069 aa34.43■■■■□ 3.1
LIMCH1-211ENST00000509638 CNMDO75829 334 aa34.42■■■■□ 3.1
LIMCH1-211ENST00000509638 FAM110CQ1W6H9 321 aa34.42■■■■□ 3.1
LIMCH1-211ENST00000509638 REPS2Q8NFH8 660 aa34.42■■■■□ 3.1
LIMCH1-211ENST00000509638 LZTS2Q9BRK4 669 aa34.42■■■■□ 3.1
LIMCH1-211ENST00000509638 LIMCH1Q9UPQ0 1083 aa34.42■■■■□ 3.1
LIMCH1-211ENST00000509638 CTDP1Q9Y5B0 961 aaPredicted RBP34.42■■■■□ 3.1
LIMCH1-211ENST00000509638 ME3Q16798 604 aa34.41■■■■□ 3.1
LIMCH1-211ENST00000509638 SRBD1Q8N5C6 995 aaKnown RBP34.41■■■■□ 3.1
LIMCH1-211ENST00000509638 RANBP17Q9H2T7 1088 aaKnown RBP34.41■■■■□ 3.1
LIMCH1-211ENST00000509638 MORF4L1Q9UBU8 362 aa34.41■■■■□ 3.1
LIMCH1-211ENST00000509638 CCDC196A0A1B0GTZ2 297 aa34.4■■■■□ 3.1
LIMCH1-211ENST00000509638 CYTH3O43739 400 aa34.4■■■■□ 3.1
LIMCH1-211ENST00000509638 ZBED4O75132 1171 aa34.4■■■■□ 3.1
LIMCH1-211ENST00000509638 ADD1P35611 737 aaKnown RBP34.4■■■■□ 3.1
LIMCH1-211ENST00000509638 ERVK-9P63128 1117 aa34.4■■■■□ 3.1
LIMCH1-211ENST00000509638 ERVK-24P63145 666 aa34.4■■■■□ 3.1
LIMCH1-211ENST00000509638 TMEM132BQ14DG7 1078 aa34.4■■■■□ 3.1
LIMCH1-211ENST00000509638 PPP2R5BQ15173 497 aa34.4■■■■□ 3.1
LIMCH1-211ENST00000509638 SPZ1Q9BXG8 430 aa34.4■■■■□ 3.1
LIMCH1-211ENST00000509638 SLKQ9H2G2 1235 aaPredicted RBP34.4■■■■□ 3.1
LIMCH1-211ENST00000509638 JMJD4Q9H9V9 463 aa34.4■■■■□ 3.1
LIMCH1-211ENST00000509638 VAT1LQ9HCJ6 419 aa34.4■■■■□ 3.1
LIMCH1-211ENST00000509638 FDX1P10109 184 aa34.4■■■■□ 3.1
LIMCH1-211ENST00000509638 ZNF214Q9UL59 606 aaPredicted RBP34.4■■■■□ 3.1
LIMCH1-211ENST00000509638 CNTNAP5Q8WYK1 1306 aa34.39■■■■□ 3.1
LIMCH1-211ENST00000509638 ZSWIM8A7E2V4 1837 aa34.39■■■■□ 3.1
LIMCH1-211ENST00000509638 PFKFB2O60825 505 aa34.39■■■■□ 3.1
LIMCH1-211ENST00000509638 PLS1Q14651 629 aa34.39■■■■□ 3.1
LIMCH1-211ENST00000509638 CDC37Q16543 378 aaPredicted RBP34.39■■■■□ 3.1
LIMCH1-211ENST00000509638 CCDC174Q6PII3 467 aa34.39■■■■□ 3.1
LIMCH1-211ENST00000509638 CCDC82Q8N4S0 544 aa34.39■■■■□ 3.1
LIMCH1-211ENST00000509638 RIOX1Q9H6W3 641 aa34.39■■■■□ 3.1
LIMCH1-211ENST00000509638 MGAMO43451 1857 aa34.38■■■■□ 3.09
LIMCH1-211ENST00000509638 HSPA1AP0DMV8 641 aaKnown RBP34.38■■■■□ 3.09
LIMCH1-211ENST00000509638 HSPA1BP0DMV9 641 aaKnown RBP34.38■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms