RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 MAP3K1Q13233 1512 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 RRS1Q15050 365 aaKnown RBP12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 TTC38Q5R3I4 469 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 SPATA1Q5VX52 437 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 TYW1BQ6NUM6 668 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 NEK9Q8TD19 979 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 GRAMD1AQ96CP6 724 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 TRAIPQ9BWF2 469 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 IKBKBO14920 756 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 PYGLP06737 847 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 POLR2BP30876 1174 aaKnown RBP12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 SERPINB4P48594 390 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 AP2B1P63010 937 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 ART3Q13508 389 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 KIF2CQ99661 725 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 LRRC2Q9BYS8 371 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 CYLC2Q14093 348 aaPredicted RBP12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 FSCBQ5H9T9 825 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 SKAP1Q86WV1 359 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 SYT2Q8N9I0 419 aaPredicted RBP12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 CXorf56Q9H5V9 222 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 SPTLC3Q9NUV7 552 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 E7ENQ6 273 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 CCDC85AQ96PX6 553 aaPredicted RBP12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 BICC1Q9H694 974 aaKnown RBP12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 SLC24A3Q9HC58 644 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 NDUFA13Q9P0J0 144 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 TMEM63CQ9P1W3 806 aa12.25□□□□□ -0.45
LIMCH1-208ENST00000508501 KDM3AQ9Y4C1 1321 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 ACTN1P12814 892 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 BPIFB4P59827 614 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 SLC9C2Q5TAH2 1124 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 EHBP1L1Q8N3D4 1523 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 UNC13AQ9UPW8 1703 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 PNMA6AP0CW24 399 aaPredicted RBP12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 AP1B1Q10567 949 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 FLOT2Q14254 428 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 CASP8Q14790 479 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 RPGRQ92834 1020 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 RNF34Q969K3 372 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 PPP1R13BQ96KQ4 1090 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 MOV10L1Q9BXT6 1211 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 DDX28Q9NUL7 540 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 PI4KAP2A4QPH2 592 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 AOC3Q16853 763 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 PI4KAP1Q8N8J0 262 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 TCEANC2Q96MN5 208 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 LRRC37BQ96QE4 947 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 SNRKQ9NRH2 765 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 SEPT3Q9UH03 358 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 SUFUQ9UMX1 484 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 CCDC188H7C350 402 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 STXBP3O00186 592 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 PGRMC1O00264 195 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 RCN2Q14257 317 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 RUBCNQ92622 972 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 HDAC11Q96DB2 347 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 MAML3Q96JK9 1138 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 MBIPQ9NS73 344 aa12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 DIS3Q9Y2L1 958 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-208ENST00000508501 SMARCA4P51532 1647 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 ESYT2A0FGR8 921 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 KCNJ18B7U540 433 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 H0YCG3 227 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 EFCAB14O75071 495 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 IFNA8P32881 189 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 MRPL28Q13084 256 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 KCNJ12Q14500 433 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 UBE3BQ7Z3V4 1068 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 THEMISQ8N1K5 641 aaPredicted RBP12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 SCYL1Q96KG9 808 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 TRIM55Q9BYV6 548 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 ANLNQ9NQW6 1124 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 ANGEL1Q9UNK9 670 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 ZNF711Q9Y462 761 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 MAGEB6P1A0A0J9YX57 407 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 HNRNPCL2B2RXH8 293 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 GRM8O00222 908 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 C4BPBP20851 252 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 CMA1P23946 247 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 BFSP1Q12934 665 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 MKRN3Q13064 507 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 SLC44A4Q53GD3 710 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 DIS3L2Q8IYB7 885 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 PRDM11Q9NQV5 511 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 H0Y626 953 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 TRIM16O95361 564 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 NSFP46459 744 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 DEFA1P59665 94 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 DEFA3P59666 94 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 KRR1Q13601 381 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 TAF12Q16514 161 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 RINT1Q6NUQ1 792 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 DDX42Q86XP3 938 aaKnown RBP eCLIP12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 PARP9Q8IXQ6 854 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 THUMPD2Q9BTF0 503 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 TEX12Q9BXU0 123 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 ZBTB40Q9NUA8 1239 aa12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 WARS2Q9UGM6 360 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-208ENST00000508501 ADAM21Q9UKJ8 722 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms