RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 SIAH1Q8IUQ4 282 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 TRPV1Q8NER1 839 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 DCTPP1Q9H773 170 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 FEM1BQ9UK73 627 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 FAM184BQ9ULE4 1060 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 TACC3Q9Y6A5 838 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 TTC41PQ6P2S7 1318 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 ROBO3Q96MS0 1386 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 DLL1O00548 723 aa13.78□□□□□ -0.2
COL6A3-213ENST00000493475 GPAA1O43292 621 aa13.78□□□□□ -0.2
COL6A3-213ENST00000493475 SMARCA5O60264 1052 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-213ENST00000493475 TTLL1O95922 423 aa13.78□□□□□ -0.2
COL6A3-213ENST00000493475 IGHA2P01877 340 aa13.78□□□□□ -0.2
COL6A3-213ENST00000493475 FAM47AQ5JRC9 791 aa13.78□□□□□ -0.2
COL6A3-213ENST00000493475 KIAA1755Q5JYT7 1200 aa13.78□□□□□ -0.2
COL6A3-213ENST00000493475 CCDC174Q6PII3 467 aa13.78□□□□□ -0.2
COL6A3-213ENST00000493475 ANKRD35Q8N283 1001 aa13.78□□□□□ -0.2
COL6A3-213ENST00000493475 TSEN34Q9BSV6 310 aaKnown RBP13.78□□□□□ -0.2
COL6A3-213ENST00000493475 FBXO28Q9NVF7 368 aa13.78□□□□□ -0.2
COL6A3-213ENST00000493475 CLIP2Q9UDT6 1046 aa13.78□□□□□ -0.2
COL6A3-213ENST00000493475 ZNF214Q9UL59 606 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-213ENST00000493475 PHF24Q9UPV7 400 aa13.78□□□□□ -0.2
COL6A3-213ENST00000493475 SYNGAP1Q96PV0 1343 aa13.78□□□□□ -0.2
COL6A3-213ENST00000493475 MOXD2PA6NHM9 499 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 GSG1L2A8MUP6 293 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 PATL2C9JE40 543 aaKnown RBP13.77□□□□□ -0.21
COL6A3-213ENST00000493475 PGK2P07205 417 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 RASA1P20936 1047 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 SLC4A3P48751 1232 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 OAZ1P54368 228 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 IKQ13123 557 aaPredicted RBP13.77□□□□□ -0.21
COL6A3-213ENST00000493475 ZNF792Q3KQV3 632 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 TRIM60Q495X7 471 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 SLFNL1Q499Z3 407 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 PRAMEF19Q5SWL8 479 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 MROH7Q68CQ1 1323 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 CHST13Q8NET6 341 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 FERMT2Q96AC1 680 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 KIFC2Q96AC6 838 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 FSD1Q9BTV5 496 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 NAPBQ9H115 298 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 MTMR10Q9NXD2 777 aa13.77□□□□□ -0.21
COL6A3-213ENST00000493475 DCDC2CA8MYV0 355 aa13.76□□□□□ -0.21
COL6A3-213ENST00000493475 ATP2A1O14983 1001 aa13.76□□□□□ -0.21
COL6A3-213ENST00000493475 NDUFB10O96000 172 aa13.76□□□□□ -0.21
COL6A3-213ENST00000493475 CLTBP09497 229 aa13.76□□□□□ -0.21
COL6A3-213ENST00000493475 RAG1P15918 1043 aa13.76□□□□□ -0.21
COL6A3-213ENST00000493475 SNX17Q15036 470 aa13.76□□□□□ -0.21
COL6A3-213ENST00000493475 ZNF467Q7Z7K2 595 aaPredicted RBP13.76□□□□□ -0.21
COL6A3-213ENST00000493475 CPXCR1Q8N123 301 aa13.76□□□□□ -0.21
COL6A3-213ENST00000493475 STK11IPQ8N1F8 1099 aa13.76□□□□□ -0.21
COL6A3-213ENST00000493475 PCSK9Q8NBP7 692 aaKnown RBP13.76□□□□□ -0.21
COL6A3-213ENST00000493475 GMCL1P1Q8NEA9 526 aa13.76□□□□□ -0.21
COL6A3-213ENST00000493475 CHURC1Q8WUH1 139 aa13.76□□□□□ -0.21
COL6A3-213ENST00000493475 ZHX1Q9UKY1 873 aaPredicted RBP13.76□□□□□ -0.21
COL6A3-213ENST00000493475 FRMPD3Q5JV73 1810 aa13.76□□□□□ -0.21
COL6A3-213ENST00000493475 MYH7P12883 1935 aa13.75□□□□□ -0.21
COL6A3-213ENST00000493475 BAZ2AQ9UIF9 1905 aaKnown RBP13.75□□□□□ -0.21
COL6A3-213ENST00000493475 STAT2P52630 851 aa13.75□□□□□ -0.21
COL6A3-213ENST00000493475 Q7L0L9 218 aa13.75□□□□□ -0.21
COL6A3-213ENST00000493475 FAM160B2Q86V87 743 aa13.75□□□□□ -0.21
COL6A3-213ENST00000493475 OSBP2Q969R2 916 aa13.75□□□□□ -0.21
COL6A3-213ENST00000493475 MKL1Q969V6 931 aa13.75□□□□□ -0.21
COL6A3-213ENST00000493475 GLT1D1Q96MS3 346 aa13.75□□□□□ -0.21
COL6A3-213ENST00000493475 ABHD16BQ9H3Z7 469 aa13.75□□□□□ -0.21
COL6A3-213ENST00000493475 STARD7Q9NQZ5 370 aa13.75□□□□□ -0.21
COL6A3-213ENST00000493475 MTMR4Q9NYA4 1195 aa13.75□□□□□ -0.21
COL6A3-213ENST00000493475 PQBP1O60828 265 aaKnown RBP13.74□□□□□ -0.21
COL6A3-213ENST00000493475 PGK1P00558 417 aa13.74□□□□□ -0.21
COL6A3-213ENST00000493475 BMP3P12645 472 aa13.74□□□□□ -0.21
COL6A3-213ENST00000493475 TLE2Q04725 743 aa13.74□□□□□ -0.21
COL6A3-213ENST00000493475 MAMDC4Q6UXC1 1216 aa13.74□□□□□ -0.21
COL6A3-213ENST00000493475 IFNL3Q8IZI9 196 aa13.74□□□□□ -0.21
COL6A3-213ENST00000493475 BADQ92934 168 aa13.74□□□□□ -0.21
COL6A3-213ENST00000493475 VTI1AQ96AJ9 217 aa13.74□□□□□ -0.21
COL6A3-213ENST00000493475 CEP95Q96GE4 821 aa13.74□□□□□ -0.21
COL6A3-213ENST00000493475 NUP88Q99567 741 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-213ENST00000493475 PDLIM7Q9NR12 457 aa13.74□□□□□ -0.21
COL6A3-213ENST00000493475 TMEM39AQ9NV64 488 aa13.74□□□□□ -0.21
COL6A3-213ENST00000493475 A0A1W2PQ45 241 aaPredicted RBP13.73□□□□□ -0.21
COL6A3-213ENST00000493475 A0A1W2PQY0 241 aa13.73□□□□□ -0.21
COL6A3-213ENST00000493475 TSPY2A6NKD2 308 aa13.73□□□□□ -0.21
COL6A3-213ENST00000493475 TLR3O15455 904 aaKnown RBP13.73□□□□□ -0.21
COL6A3-213ENST00000493475 DUSP11O75319 330 aaKnown RBP13.73□□□□□ -0.21
COL6A3-213ENST00000493475 SLC1A4P43007 532 aa13.73□□□□□ -0.21
COL6A3-213ENST00000493475 SMAD3P84022 425 aaKnown RBP13.73□□□□□ -0.21
COL6A3-213ENST00000493475 TKFCQ3LXA3 575 aa13.73□□□□□ -0.21
COL6A3-213ENST00000493475 C20orf194Q5TEA3 1177 aa13.73□□□□□ -0.21
COL6A3-213ENST00000493475 SLFN13Q68D06 897 aa13.73□□□□□ -0.21
COL6A3-213ENST00000493475 REPS2Q8NFH8 660 aa13.73□□□□□ -0.21
COL6A3-213ENST00000493475 NEDD1Q8NHV4 660 aa13.73□□□□□ -0.21
COL6A3-213ENST00000493475 TOX2Q96NM4 488 aa13.73□□□□□ -0.21
COL6A3-213ENST00000493475 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.73□□□□□ -0.21
COL6A3-213ENST00000493475 ACAD9Q9H845 621 aa13.73□□□□□ -0.21
COL6A3-213ENST00000493475 SLC38A10Q9HBR0 1119 aa13.73□□□□□ -0.21
COL6A3-213ENST00000493475 STX8Q9UNK0 236 aa13.73□□□□□ -0.21
COL6A3-213ENST00000493475 PLIN4Q96Q06 1357 aa13.72□□□□□ -0.21
COL6A3-213ENST00000493475 ELP1O95163 1332 aa13.72□□□□□ -0.21
COL6A3-213ENST00000493475 ASB14A6NK59 587 aa13.72□□□□□ -0.21
COL6A3-213ENST00000493475 ZEB2O60315 1214 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms