RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 ZHX2Q9Y6X8 837 aa7.48□□□□□ -1.21
PTCD3-215ENST00000484203 COL2A1P02458 1487 aaPredicted RBP7.48□□□□□ -1.21
PTCD3-215ENST00000484203 PHF20L1A8MW92 1017 aa7.47□□□□□ -1.21
PTCD3-215ENST00000484203 BTBD19C9JJ37 291 aa7.47□□□□□ -1.21
PTCD3-215ENST00000484203 PDHXO00330 501 aa7.47□□□□□ -1.21
PTCD3-215ENST00000484203 CYP2E1P05181 493 aaPredicted RBP7.47□□□□□ -1.21
PTCD3-215ENST00000484203 ADH1AP07327 375 aa7.47□□□□□ -1.21
PTCD3-215ENST00000484203 BMP2P12643 396 aa7.47□□□□□ -1.21
PTCD3-215ENST00000484203 CAPN2P17655 700 aa7.47□□□□□ -1.21
PTCD3-215ENST00000484203 PTPRAP18433 802 aa7.47□□□□□ -1.21
PTCD3-215ENST00000484203 RELBQ01201 579 aa7.47□□□□□ -1.21
PTCD3-215ENST00000484203 TBC1D9Q6ZT07 1266 aa7.47□□□□□ -1.21
PTCD3-215ENST00000484203 OTOP1Q7RTM1 612 aa7.47□□□□□ -1.21
PTCD3-215ENST00000484203 FAM43AQ8N2R8 423 aa7.47□□□□□ -1.21
PTCD3-215ENST00000484203 RHPN1Q8TCX5 695 aa7.47□□□□□ -1.21
PTCD3-215ENST00000484203 KIFC2Q96AC6 838 aa7.47□□□□□ -1.21
PTCD3-215ENST00000484203 EAF2Q96CJ1 260 aaPredicted RBP7.47□□□□□ -1.21
PTCD3-215ENST00000484203 UCN2Q96RP3 112 aa7.47□□□□□ -1.21
PTCD3-215ENST00000484203 AS3MTQ9HBK9 375 aa7.47□□□□□ -1.21
PTCD3-215ENST00000484203 PTPN22Q9Y2R2 807 aa7.47□□□□□ -1.21
PTCD3-215ENST00000484203 RFX7Q2KHR2 1363 aa7.46□□□□□ -1.21
PTCD3-215ENST00000484203 A0A0G2JLL6 359 aaPredicted RBP7.46□□□□□ -1.22
PTCD3-215ENST00000484203 DDTLA6NHG4 134 aaPredicted RBP7.46□□□□□ -1.22
PTCD3-215ENST00000484203 IDH1O75874 414 aaKnown RBP7.46□□□□□ -1.22
PTCD3-215ENST00000484203 ASNSP08243 561 aa7.46□□□□□ -1.22
PTCD3-215ENST00000484203 CYP7A1P22680 504 aa7.46□□□□□ -1.22
PTCD3-215ENST00000484203 ZAP70P43403 619 aa7.46□□□□□ -1.22
PTCD3-215ENST00000484203 EML3Q32P44 896 aa7.46□□□□□ -1.22
PTCD3-215ENST00000484203 PI16Q6UXB8 463 aa7.46□□□□□ -1.22
PTCD3-215ENST00000484203 PRRT2Q7Z6L0 340 aaPredicted RBP7.46□□□□□ -1.22
PTCD3-215ENST00000484203 TTC6Q86TZ1 520 aa7.46□□□□□ -1.22
PTCD3-215ENST00000484203 ZFPM1Q8IX07 1006 aa7.46□□□□□ -1.22
PTCD3-215ENST00000484203 DEPDC4Q8N2C3 294 aa7.46□□□□□ -1.22
PTCD3-215ENST00000484203 CRACR2BQ8N4Y2 399 aaPredicted RBP7.46□□□□□ -1.22
PTCD3-215ENST00000484203 GPATCH3Q96I76 525 aa7.46□□□□□ -1.22
PTCD3-215ENST00000484203 TRIM47Q96LD4 638 aa7.46□□□□□ -1.22
PTCD3-215ENST00000484203 ZFP42Q96MM3 310 aa7.46□□□□□ -1.22
PTCD3-215ENST00000484203 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.46□□□□□ -1.223e-7■■■□□ 15.4
PTCD3-215ENST00000484203 CCDC8Q9H0W5 538 aaPredicted RBP7.46□□□□□ -1.22
PTCD3-215ENST00000484203 R3HDMLQ9H3Y0 253 aa7.46□□□□□ -1.22
PTCD3-215ENST00000484203 DDX4Q9NQI0 724 aaKnown RBP7.46□□□□□ -1.22
PTCD3-215ENST00000484203 EXOC6BQ9Y2D4 811 aa7.46□□□□□ -1.22
PTCD3-215ENST00000484203 AFG3L2Q9Y4W6 797 aa7.46□□□□□ -1.22
PTCD3-215ENST00000484203 SPEF2Q9C093 1822 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 USP17L5A8MUK1 530 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 C19orf81C9J6K1 198 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 ATP9BO43861 1147 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 CAP2P40123 477 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 USP5P45974 858 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 FCGRTP55899 365 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 LACTBP83111 547 aaPredicted RBP7.45□□□□□ -1.22
PTCD3-215ENST00000484203 AAMPQ13685 434 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 LRRFIP1Q32MZ4 808 aaKnown RBP7.45□□□□□ -1.22
PTCD3-215ENST00000484203 ZSCAN25Q6NSZ9 544 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 C17orf99Q6UX52 265 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 CYP2U1Q7Z449 544 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 METTL16Q86W50 562 aaKnown RBP7.45□□□□□ -1.22
PTCD3-215ENST00000484203 ZNF280CQ8ND82 737 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 CD99L2Q8TCZ2 262 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 SH3RF3Q8TEJ3 882 aaPredicted RBP7.45□□□□□ -1.22
PTCD3-215ENST00000484203 SMCR8Q8TEV9 937 aaPredicted RBP7.45□□□□□ -1.22
PTCD3-215ENST00000484203 ZNF384Q8TF68 577 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 GTF3C2Q8WUA4 911 aaPredicted RBP7.45□□□□□ -1.22
PTCD3-215ENST00000484203 ARMC5Q96C12 935 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 WDR18Q9BV38 432 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 EHD4Q9H223 541 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 OSBPL3Q9H4L5 887 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 ZNF395Q9H8N7 513 aaPredicted RBP7.45□□□□□ -1.22
PTCD3-215ENST00000484203 AATFQ9NY61 560 aaKnown RBP eCLIP7.45□□□□□ -1.22
PTCD3-215ENST00000484203 TFIP11Q9UBB9 837 aaKnown RBP7.45□□□□□ -1.22
PTCD3-215ENST00000484203 AGTPBP1Q9UPW5 1226 aa7.45□□□□□ -1.22
PTCD3-215ENST00000484203 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.45□□□□□ -1.22
PTCD3-215ENST00000484203 LZTS3O60299 673 aaPredicted RBP7.44□□□□□ -1.22
PTCD3-215ENST00000484203 WFS1O76024 890 aa7.44□□□□□ -1.22
PTCD3-215ENST00000484203 PTGIRP43119 386 aa7.44□□□□□ -1.22
PTCD3-215ENST00000484203 GCLCP48506 637 aaPredicted RBP7.44□□□□□ -1.22
PTCD3-215ENST00000484203 NCOA4Q13772 614 aa7.44□□□□□ -1.22
PTCD3-215ENST00000484203 SLC9C1Q4G0N8 1177 aa7.44□□□□□ -1.22
PTCD3-215ENST00000484203 SLC9C2Q5TAH2 1124 aa7.44□□□□□ -1.22
PTCD3-215ENST00000484203 AMOTL1Q8IY63 956 aa7.44□□□□□ -1.22
PTCD3-215ENST00000484203 MAGEB6Q8N7X4 407 aa7.44□□□□□ -1.22
PTCD3-215ENST00000484203 TGFBRAP1Q8WUH2 860 aa7.44□□□□□ -1.22
PTCD3-215ENST00000484203 CRNKL1Q9BZJ0 848 aaKnown RBP7.44□□□□□ -1.22
PTCD3-215ENST00000484203 LRRCC1Q9C099 1032 aa7.44□□□□□ -1.22
PTCD3-215ENST00000484203 PIH1D3Q9NQM4 214 aaKnown RBP7.44□□□□□ -1.22
PTCD3-215ENST00000484203 TMOD4Q9NZQ9 345 aa7.44□□□□□ -1.22
PTCD3-215ENST00000484203 FLT1P17948 1338 aa7.44□□□□□ -1.22
PTCD3-215ENST00000484203 POLR2AP24928 1970 aaKnown RBP7.44□□□□□ -1.22
PTCD3-215ENST00000484203 PALM3A6NDB9 673 aaPredicted RBP7.43□□□□□ -1.22
PTCD3-215ENST00000484203 TRIM75PA6NK02 468 aa7.43□□□□□ -1.22
PTCD3-215ENST00000484203 ATP5JP18859 108 aa7.43□□□□□ -1.22
PTCD3-215ENST00000484203 SPP2Q13103 211 aa7.43□□□□□ -1.22
PTCD3-215ENST00000484203 GADL1Q6ZQY3 521 aa7.43□□□□□ -1.22
PTCD3-215ENST00000484203 MAPKAPK5Q8IW41 473 aa7.43□□□□□ -1.22
PTCD3-215ENST00000484203 KDF1Q8NAX2 398 aaPredicted RBP7.43□□□□□ -1.22
PTCD3-215ENST00000484203 PPP1R12CQ9BZL4 782 aa7.43□□□□□ -1.22
PTCD3-215ENST00000484203 IL1RAPL2Q9NP60 686 aa7.43□□□□□ -1.22
PTCD3-215ENST00000484203 CABP5Q9NP86 173 aa7.43□□□□□ -1.22
PTCD3-215ENST00000484203 TLR7Q9NYK1 1049 aaKnown RBP7.43□□□□□ -1.22
PTCD3-215ENST00000484203 SRRDQ9UH36 339 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms