RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 FBXO18Q8NFZ0 1043 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 WASF1Q92558 559 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 TNPO1Q92973 898 aaKnown RBP9.55□□□□□ -0.88
USP4-210ENST00000483212 JMJD4Q9H9V9 463 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 AS3MTQ9HBK9 375 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 GOPCQ9HD26 462 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 RBM27Q9P2N5 1060 aaKnown RBP9.55□□□□□ -0.88
USP4-210ENST00000483212 KIF3AQ9Y496 699 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 ZHX2Q9Y6X8 837 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 LOC285556D6RIA3 1793 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 PASKQ96RG2 1323 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 VPS37CA5D8V6 355 aaPredicted RBP9.54□□□□□ -0.88
USP4-210ENST00000483212 WDR46O15213 610 aaKnown RBP9.54□□□□□ -0.88
USP4-210ENST00000483212 PPP1R11O60927 126 aaPredicted RBP9.54□□□□□ -0.88
USP4-210ENST00000483212 SCG2P13521 617 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 VCAM1P19320 739 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 FOSBP53539 338 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 USP14P54578 494 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 PPATQ06203 517 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 CST9Q5W186 159 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 KRT40Q6A162 431 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 WWC2Q6AWC2 1192 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 ARMC9Q7Z3E5 817 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 ERO1BQ86YB8 467 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 LPAR1Q92633 364 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 C8orf76Q96K31 380 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 PIGSQ96S52 555 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 FEZ1Q99689 392 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 PHF20Q9BVI0 1012 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 ELP3Q9H9T3 547 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 KCNH4Q9UQ05 1017 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 CSADQ9Y600 493 aa9.54□□□□□ -0.88
USP4-210ENST00000483212 PTPRFP10586 1907 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 TRIM75PA6NK02 468 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 KIF28PB7ZC32 967 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 C19orf81C9J6K1 198 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 TMEM232C9JQI7 657 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 STXBP3O00186 592 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 ADAMTS3O15072 1205 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 RAD21O60216 631 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 MMP1P03956 469 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 GJA5P36382 358 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 GUCY1B3Q02153 619 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 KIF23Q02241 960 aaPredicted RBP9.53□□□□□ -0.88
USP4-210ENST00000483212 PPIL2Q13356 520 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 MKRN4PQ13434 485 aaPredicted RBP9.53□□□□□ -0.88
USP4-210ENST00000483212 MOGSQ13724 837 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 SYDE2Q5VT97 1194 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 GPKOWQ92917 476 aaPredicted RBP eCLIP9.53□□□□□ -0.88
USP4-210ENST00000483212 RRP36Q96EU6 259 aaKnown RBP9.53□□□□□ -0.88
USP4-210ENST00000483212 CHAMP1Q96JM3 812 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 ZNF408Q9H9D4 720 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 GPBP1L1Q9HC44 474 aaPredicted RBP9.53□□□□□ -0.88
USP4-210ENST00000483212 GBA2Q9HCG7 927 aaPredicted RBP9.53□□□□□ -0.88
USP4-210ENST00000483212 BARHL2Q9NY43 387 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 VPS54Q9P1Q0 977 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 PRR12Q9ULL5 1215 aa9.53□□□□□ -0.88
USP4-210ENST00000483212 MYH6P13533 1939 aa9.52□□□□□ -0.88
USP4-210ENST00000483212 RLFQ13129 1914 aa9.52□□□□□ -0.88
USP4-210ENST00000483212 PARP14Q460N5 1801 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 A0A0G2JLL6 359 aaPredicted RBP9.52□□□□□ -0.89
USP4-210ENST00000483212 PNMA6FA0A0J9YX94 578 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 CXCL11O14625 94 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 IRF6O14896 467 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 ZBTB5O15062 677 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 CELF2O95319 508 aaKnown RBP9.52□□□□□ -0.89
USP4-210ENST00000483212 STAT2P52630 851 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 HMGCS2P54868 508 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 AKAP17AQ02040 695 aaKnown RBP9.52□□□□□ -0.89
USP4-210ENST00000483212 TTLL12Q14166 644 aaPredicted RBP9.52□□□□□ -0.89
USP4-210ENST00000483212 CDC37Q16543 378 aaPredicted RBP9.52□□□□□ -0.89
USP4-210ENST00000483212 QRICH1Q2TAL8 776 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 FOXD4L5Q5VV16 416 aaPredicted RBP9.52□□□□□ -0.89
USP4-210ENST00000483212 PRRT2Q7Z6L0 340 aaPredicted RBP9.52□□□□□ -0.89
USP4-210ENST00000483212 FAM160B2Q86V87 743 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 HOMER1Q86YM7 354 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 FAM177A1Q8N128 213 aaPredicted RBP9.52□□□□□ -0.89
USP4-210ENST00000483212 RBM46Q8TBY0 533 aaKnown RBP9.52□□□□□ -0.89
USP4-210ENST00000483212 FOXD4L4Q8WXT5 416 aaPredicted RBP9.52□□□□□ -0.89
USP4-210ENST00000483212 PIBF1Q8WXW3 757 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 TNFRSF25Q93038 417 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 RANBP17Q9H2T7 1088 aaKnown RBP9.52□□□□□ -0.89
USP4-210ENST00000483212 VAT1LQ9HCJ6 419 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 SH3GLB2Q9NR46 395 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 FBXO28Q9NVF7 368 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 FEM1BQ9UK73 627 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 KCNJ14Q9UNX9 436 aa9.52□□□□□ -0.89
USP4-210ENST00000483212 TRPM7Q96QT4 1865 aa9.51□□□□□ -0.89
USP4-210ENST00000483212 ESYT2A0FGR8 921 aa9.51□□□□□ -0.89
USP4-210ENST00000483212 H3BQV1 296 aa9.51□□□□□ -0.89
USP4-210ENST00000483212 hCG_1984214I3L0E3 225 aa9.51□□□□□ -0.89
USP4-210ENST00000483212 M0R2N6 131 aa9.51□□□□□ -0.89
USP4-210ENST00000483212 U2AF2P26368 475 aaKnown RBP eCLIP9.51□□□□□ -0.89
USP4-210ENST00000483212 IFFO2Q5TF58 517 aa9.51□□□□□ -0.89
USP4-210ENST00000483212 PPP1R18Q6NYC8 613 aa9.51□□□□□ -0.89
USP4-210ENST00000483212 FERMT3Q86UX7 667 aa9.51□□□□□ -0.89
USP4-210ENST00000483212 ZNF713Q8N859 430 aaPredicted RBP9.51□□□□□ -0.89
USP4-210ENST00000483212 DAGLBQ8NCG7 672 aa9.51□□□□□ -0.89
USP4-210ENST00000483212 OXER1Q8TDS5 423 aa9.51□□□□□ -0.89
USP4-210ENST00000483212 OPTNQ96CV9 577 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms