RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 SPDYE5A6NIY4 337 aa20.31■□□□□ 0.84
UPF3A-206ENST00000480362 KIF3CO14782 793 aa20.31■□□□□ 0.84
UPF3A-206ENST00000480362 WDR46O15213 610 aaKnown RBP20.31■□□□□ 0.84
UPF3A-206ENST00000480362 HMGCS2P54868 508 aa20.31■□□□□ 0.84
UPF3A-206ENST00000480362 SLC10A4Q96EP9 437 aa20.31■□□□□ 0.84
UPF3A-206ENST00000480362 SEC63Q9UGP8 760 aaKnown RBP20.31■□□□□ 0.84
UPF3A-206ENST00000480362 FEM1BQ9UK73 627 aa20.31■□□□□ 0.84
UPF3A-206ENST00000480362 BAZ2BQ9UIF8 2168 aaKnown RBP20.31■□□□□ 0.84
UPF3A-206ENST00000480362 F13A1P00488 732 aa20.3■□□□□ 0.84
UPF3A-206ENST00000480362 XBP1P17861 261 aa20.3■□□□□ 0.84
UPF3A-206ENST00000480362 STAT2P52630 851 aa20.3■□□□□ 0.84
UPF3A-206ENST00000480362 SH3D19Q5HYK7 790 aa20.3■□□□□ 0.84
UPF3A-206ENST00000480362 SYDE2Q5VT97 1194 aa20.3■□□□□ 0.84
UPF3A-206ENST00000480362 CST9Q5W186 159 aa20.3■□□□□ 0.84
UPF3A-206ENST00000480362 FAM160B2Q86V87 743 aa20.3■□□□□ 0.84
UPF3A-206ENST00000480362 RBM46Q8TBY0 533 aaKnown RBP20.3■□□□□ 0.84
UPF3A-206ENST00000480362 CHURC1Q8WUH1 139 aa20.3■□□□□ 0.84
UPF3A-206ENST00000480362 TNPO1Q92973 898 aaKnown RBP20.3■□□□□ 0.84
UPF3A-206ENST00000480362 MTMR8Q96EF0 704 aa20.3■□□□□ 0.84
UPF3A-206ENST00000480362 OTUD5Q96G74 571 aa20.3■□□□□ 0.84
UPF3A-206ENST00000480362 C12orf42Q96LP6 360 aa20.3■□□□□ 0.84
UPF3A-206ENST00000480362 TMOD4Q9NZQ9 345 aa20.3■□□□□ 0.84
UPF3A-206ENST00000480362 VPS54Q9P1Q0 977 aa20.3■□□□□ 0.84
UPF3A-206ENST00000480362 PNMA6FA0A0J9YX94 578 aa20.29■□□□□ 0.84
UPF3A-206ENST00000480362 PLA2G6O60733 806 aa20.29■□□□□ 0.84
UPF3A-206ENST00000480362 VCAM1P19320 739 aa20.29■□□□□ 0.84
UPF3A-206ENST00000480362 MCTP1Q6DN14 999 aa20.29■□□□□ 0.84
UPF3A-206ENST00000480362 GPKOWQ92917 476 aaPredicted RBP eCLIP20.29■□□□□ 0.84
UPF3A-206ENST00000480362 OPTNQ96CV9 577 aa20.29■□□□□ 0.84
UPF3A-206ENST00000480362 SHISA4Q96DD7 197 aa20.29■□□□□ 0.84
UPF3A-206ENST00000480362 PRR12Q9ULL5 1215 aa20.29■□□□□ 0.84
UPF3A-206ENST00000480362 KCNJ14Q9UNX9 436 aa20.29■□□□□ 0.84
UPF3A-206ENST00000480362 IRF6O14896 467 aa20.28■□□□□ 0.84
UPF3A-206ENST00000480362 PPIL2Q13356 520 aa20.28■□□□□ 0.84
UPF3A-206ENST00000480362 WWC2Q6AWC2 1192 aa20.28■□□□□ 0.84
UPF3A-206ENST00000480362 HEATR3Q7Z4Q2 680 aa20.28■□□□□ 0.84
UPF3A-206ENST00000480362 FERMT3Q86UX7 667 aa20.28■□□□□ 0.84
UPF3A-206ENST00000480362 KIFC2Q96AC6 838 aa20.28■□□□□ 0.84
UPF3A-206ENST00000480362 RPAP3Q9H6T3 665 aaPredicted RBP20.28■□□□□ 0.84
UPF3A-206ENST00000480362 CXCL11O14625 94 aa20.27■□□□□ 0.84
UPF3A-206ENST00000480362 ZBTB5O15062 677 aa20.27■□□□□ 0.84
UPF3A-206ENST00000480362 SNAP25P60880 206 aa20.27■□□□□ 0.84
UPF3A-206ENST00000480362 QRICH1Q2TAL8 776 aa20.27■□□□□ 0.84
UPF3A-206ENST00000480362 TANGO6Q9C0B7 1094 aa20.27■□□□□ 0.84
UPF3A-206ENST00000480362 SH3GLB2Q9NR46 395 aa20.27■□□□□ 0.84
UPF3A-206ENST00000480362 FBXO28Q9NVF7 368 aa20.27■□□□□ 0.84
UPF3A-206ENST00000480362 BARHL2Q9NY43 387 aa20.27■□□□□ 0.84
UPF3A-206ENST00000480362 STXBP3O00186 592 aa20.26■□□□□ 0.83
UPF3A-206ENST00000480362 MMP1P03956 469 aa20.26■□□□□ 0.83
UPF3A-206ENST00000480362 NLRP5P59047 1200 aa20.26■□□□□ 0.83
UPF3A-206ENST00000480362 RESTQ13127 1097 aa20.26■□□□□ 0.83
UPF3A-206ENST00000480362 CDC37Q16543 378 aaPredicted RBP20.26■□□□□ 0.83
UPF3A-206ENST00000480362 SAMD1Q6SPF0 538 aaPredicted RBP20.26■□□□□ 0.83
UPF3A-206ENST00000480362 SMC1BQ8NDV3 1235 aa20.26■□□□□ 0.83
UPF3A-206ENST00000480362 PHF20Q9BVI0 1012 aa20.26■□□□□ 0.83
UPF3A-206ENST00000480362 ZSCAN16Q9H4T2 348 aaPredicted RBP20.26■□□□□ 0.83
UPF3A-206ENST00000480362 KCNH4Q9UQ05 1017 aa20.26■□□□□ 0.83
UPF3A-206ENST00000480362 TRPM7Q96QT4 1865 aa20.25■□□□□ 0.83
UPF3A-206ENST00000480362 A0A0G2JLL6 359 aaPredicted RBP20.25■□□□□ 0.83
UPF3A-206ENST00000480362 PPP1R11O60927 126 aaPredicted RBP20.25■□□□□ 0.83
UPF3A-206ENST00000480362 GJA5P36382 358 aa20.25■□□□□ 0.83
UPF3A-206ENST00000480362 KIF23Q02241 960 aaPredicted RBP20.25■□□□□ 0.83
UPF3A-206ENST00000480362 SAFBQ15424 915 aaKnown RBP eCLIP20.25■□□□□ 0.83
UPF3A-206ENST00000480362 TYW1BQ6NUM6 668 aa20.25■□□□□ 0.83
UPF3A-206ENST00000480362 PRRT2Q7Z6L0 340 aaPredicted RBP20.25■□□□□ 0.83
UPF3A-206ENST00000480362 PRPF38AQ8NAV1 312 aaKnown RBP20.25■□□□□ 0.83
UPF3A-206ENST00000480362 COA7Q96BR5 231 aa20.25■□□□□ 0.83
UPF3A-206ENST00000480362 SLF1Q9BQI6 1058 aa20.25■□□□□ 0.83
UPF3A-206ENST00000480362 PASKQ96RG2 1323 aa20.25■□□□□ 0.83
UPF3A-206ENST00000480362 hCG_1984214I3L0E3 225 aa20.24■□□□□ 0.83
UPF3A-206ENST00000480362 FLOT1O75955 427 aa20.24■□□□□ 0.83
UPF3A-206ENST00000480362 NAPAP54920 295 aa20.24■□□□□ 0.83
UPF3A-206ENST00000480362 FOXD4L6Q3SYB3 417 aaPredicted RBP20.24■□□□□ 0.83
UPF3A-206ENST00000480362 FOXD4L3Q6VB84 417 aaPredicted RBP20.24■□□□□ 0.83
UPF3A-206ENST00000480362 GADL1Q6ZQY3 521 aa20.24■□□□□ 0.83
UPF3A-206ENST00000480362 ZNF713Q8N859 430 aaPredicted RBP20.24■□□□□ 0.83
UPF3A-206ENST00000480362 CCDC148Q8NFR7 591 aa20.24■□□□□ 0.83
UPF3A-206ENST00000480362 KIF28PB7ZC32 967 aa20.23■□□□□ 0.83
UPF3A-206ENST00000480362 USP17L15C9J2P7 530 aa20.23■□□□□ 0.83
UPF3A-206ENST00000480362 USP17L13C9JLJ4 530 aa20.23■□□□□ 0.83
UPF3A-206ENST00000480362 USP17L11C9JVI0 530 aa20.23■□□□□ 0.83
UPF3A-206ENST00000480362 USP17L18D6R9N7 530 aa20.23■□□□□ 0.83
UPF3A-206ENST00000480362 USP17L22D6RA61 530 aa20.23■□□□□ 0.83
UPF3A-206ENST00000480362 USP17L17D6RBQ6 530 aa20.23■□□□□ 0.83
UPF3A-206ENST00000480362 USP17L19D6RCP7 530 aa20.23■□□□□ 0.83
UPF3A-206ENST00000480362 USP17L20D6RJB6 530 aa20.23■□□□□ 0.83
UPF3A-206ENST00000480362 YY1P25490 414 aa20.23■□□□□ 0.83
UPF3A-206ENST00000480362 USP17L24Q0WX57 530 aa20.23■□□□□ 0.83
UPF3A-206ENST00000480362 GNL2Q13823 731 aaKnown RBP20.23■□□□□ 0.83
UPF3A-206ENST00000480362 CATSPERGQ6ZRH7 1159 aa20.23■□□□□ 0.83
UPF3A-206ENST00000480362 DIS3L2Q8IYB7 885 aaKnown RBP20.23■□□□□ 0.83
UPF3A-206ENST00000480362 FAM177A1Q8N128 213 aaPredicted RBP20.23■□□□□ 0.83
UPF3A-206ENST00000480362 CCDC12Q8WUD4 166 aaPredicted RBP20.23■□□□□ 0.83
UPF3A-206ENST00000480362 WNK4Q96J92 1243 aa20.23■□□□□ 0.83
UPF3A-206ENST00000480362 AMNQ9BXJ7 453 aa20.23■□□□□ 0.83
UPF3A-206ENST00000480362 RANBP17Q9H2T7 1088 aaKnown RBP20.23■□□□□ 0.83
UPF3A-206ENST00000480362 PPP1R9AQ9ULJ8 1098 aa20.23■□□□□ 0.83
UPF3A-206ENST00000480362 ATP6V1DQ9Y5K8 247 aa20.23■□□□□ 0.83
UPF3A-206ENST00000480362 PTPRFP10586 1907 aa20.22■□□□□ 0.83
UPF3A-206ENST00000480362 BTBD18B2RXH4 712 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms