RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 GTF2IRD2Q86UP8 949 aa7.13□□□□□ -1.27
UPF3B-203ENST00000478840 SLC7A14Q8TBB6 771 aa7.13□□□□□ -1.27
UPF3B-203ENST00000478840 BTN2A2Q8WVV5 523 aa7.13□□□□□ -1.27
UPF3B-203ENST00000478840 CNTNAP5Q8WYK1 1306 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 SART1O43290 800 aaKnown RBP7.12□□□□□ -1.27
UPF3B-203ENST00000478840 ALX3O95076 343 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 EYA4O95677 639 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 NFICP08651 508 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 SPATA31C1P0DKV0 1188 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 RAB6AP20340 208 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 NRG1Q02297 640 aaPredicted RBP7.12□□□□□ -1.27
UPF3B-203ENST00000478840 CT47A1Q5JQC4 288 aaPredicted RBP7.12□□□□□ -1.27
UPF3B-203ENST00000478840 NOL9Q5SY16 702 aaKnown RBP7.12□□□□□ -1.27
UPF3B-203ENST00000478840 GPAT2Q6NUI2 795 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 AHI1Q8N157 1196 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 ADCY4Q8NFM4 1077 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 KCTD13Q8WZ19 329 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 PTPRN2Q92932 1015 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 C1orf159Q96HA4 380 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 PRDM14Q9GZV8 571 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 SLC52A2Q9HAB3 445 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 CYP26B1Q9NR63 512 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 CHPF2Q9P2E5 772 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 DAGLAQ9Y4D2 1042 aa7.12□□□□□ -1.27
UPF3B-203ENST00000478840 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.11□□□□□ -1.27
UPF3B-203ENST00000478840 GAS2O43903 313 aaKnown RBP7.11□□□□□ -1.27
UPF3B-203ENST00000478840 KCNH1O95259 989 aa7.11□□□□□ -1.27
UPF3B-203ENST00000478840 EOMESO95936 686 aa7.11□□□□□ -1.27
UPF3B-203ENST00000478840 CPP00450 1065 aa7.11□□□□□ -1.27
UPF3B-203ENST00000478840 ASLP04424 464 aa7.11□□□□□ -1.27
UPF3B-203ENST00000478840 CYP7A1P22680 504 aa7.11□□□□□ -1.27
UPF3B-203ENST00000478840 GRIK4Q16099 956 aa7.11□□□□□ -1.27
UPF3B-203ENST00000478840 NTRK3Q16288 839 aa7.11□□□□□ -1.27
UPF3B-203ENST00000478840 BRDTQ58F21 947 aaPredicted RBP7.11□□□□□ -1.27
UPF3B-203ENST00000478840 SLC35F1Q5T1Q4 408 aa7.11□□□□□ -1.27
UPF3B-203ENST00000478840 MAMDC2Q7Z304 686 aaPredicted RBP7.11□□□□□ -1.27
UPF3B-203ENST00000478840 BRAPQ7Z569 592 aa7.11□□□□□ -1.27
UPF3B-203ENST00000478840 FIBCD1Q8N539 461 aa7.11□□□□□ -1.27
UPF3B-203ENST00000478840 FBLIM1Q8WUP2 373 aa7.11□□□□□ -1.27
UPF3B-203ENST00000478840 UBL7Q96S82 380 aaPredicted RBP7.11□□□□□ -1.27
UPF3B-203ENST00000478840 CEP89Q96ST8 783 aa7.11□□□□□ -1.27
UPF3B-203ENST00000478840 FBXL21Q9UKT6 434 aa7.11□□□□□ -1.27
UPF3B-203ENST00000478840 C9orf172C9J069 976 aa7.1□□□□□ -1.27
UPF3B-203ENST00000478840 DYNC1LI2O43237 492 aaPredicted RBP7.1□□□□□ -1.27
UPF3B-203ENST00000478840 KCNMA1Q12791 1236 aa7.1□□□□□ -1.27
UPF3B-203ENST00000478840 SNW1Q13573 536 aaKnown RBP7.1□□□□□ -1.27
UPF3B-203ENST00000478840 SF1Q15637 639 aaKnown RBP7.1□□□□□ -1.27
UPF3B-203ENST00000478840 SGO2Q562F6 1265 aa7.1□□□□□ -1.27
UPF3B-203ENST00000478840 DZIP1LQ8IYY4 767 aaKnown RBP7.1□□□□□ -1.27
UPF3B-203ENST00000478840 UBR7Q8N806 425 aa7.1□□□□□ -1.27
UPF3B-203ENST00000478840 BRF1Q92994 677 aa7.1□□□□□ -1.27
UPF3B-203ENST00000478840 SCLYQ96I15 445 aa7.1□□□□□ -1.27
UPF3B-203ENST00000478840 NOL6Q9H6R4 1146 aaKnown RBP7.1□□□□□ -1.27
UPF3B-203ENST00000478840 C1GALT1Q9NS00 363 aa7.1□□□□□ -1.27
UPF3B-203ENST00000478840 SF3B6Q9Y3B4 125 aaKnown RBP7.1□□□□□ -1.27
UPF3B-203ENST00000478840 SIGLEC6O43699 453 aa7.09□□□□□ -1.27
UPF3B-203ENST00000478840 GLB1P16278 677 aa7.09□□□□□ -1.27
UPF3B-203ENST00000478840 CPEP16870 476 aa7.09□□□□□ -1.27
UPF3B-203ENST00000478840 NOS3P29474 1203 aa7.09□□□□□ -1.27
UPF3B-203ENST00000478840 EVA1CP58658 441 aa7.09□□□□□ -1.27
UPF3B-203ENST00000478840 CYP4F3Q08477 520 aa7.09□□□□□ -1.27
UPF3B-203ENST00000478840 DHCR24Q15392 516 aa7.09□□□□□ -1.27
UPF3B-203ENST00000478840 ODR4Q5SWX8 454 aa7.09□□□□□ -1.27
UPF3B-203ENST00000478840 CNNM4Q6P4Q7 775 aa7.09□□□□□ -1.27
UPF3B-203ENST00000478840 C22orf34Q6ZV56 151 aa7.09□□□□□ -1.27
UPF3B-203ENST00000478840 DDX46Q7L014 1031 aaKnown RBP7.09□□□□□ -1.27
UPF3B-203ENST00000478840 TMEM145Q8NBT3 493 aa7.09□□□□□ -1.27
UPF3B-203ENST00000478840 WFDC12Q8WWY7 111 aa7.09□□□□□ -1.27
UPF3B-203ENST00000478840 MYRFLQ96LU7 910 aa7.09□□□□□ -1.27
UPF3B-203ENST00000478840 NACC1Q96RE7 527 aa7.09□□□□□ -1.27
UPF3B-203ENST00000478840 NDOR1Q9UHB4 597 aa7.09□□□□□ -1.27
UPF3B-203ENST00000478840 USP21Q9UK80 565 aa7.09□□□□□ -1.27
UPF3B-203ENST00000478840 WASHC2CQ9Y4E1 1318 aa7.08□□□□□ -1.28
UPF3B-203ENST00000478840 RNF225M0QZC1 329 aaPredicted RBP7.08□□□□□ -1.28
UPF3B-203ENST00000478840 SNRPB2P08579 225 aaKnown RBP7.08□□□□□ -1.28
UPF3B-203ENST00000478840 IGFALSP35858 605 aa7.08□□□□□ -1.28
UPF3B-203ENST00000478840 KIR3DL1P43629 444 aa7.08□□□□□ -1.28
UPF3B-203ENST00000478840 AMPD2Q01433 879 aa7.08□□□□□ -1.28
UPF3B-203ENST00000478840 TESK1Q15569 626 aa7.08□□□□□ -1.28
UPF3B-203ENST00000478840 WWC2Q6AWC2 1192 aa7.08□□□□□ -1.28
UPF3B-203ENST00000478840 STYK1Q6J9G0 422 aa7.08□□□□□ -1.28
UPF3B-203ENST00000478840 FAM214BQ7L5A3 538 aa7.08□□□□□ -1.28
UPF3B-203ENST00000478840 FGD2Q7Z6J4 655 aa7.08□□□□□ -1.28
UPF3B-203ENST00000478840 KREMEN2Q8NCW0 462 aa7.08□□□□□ -1.28
UPF3B-203ENST00000478840 JDP2Q8WYK2 163 aa7.08□□□□□ -1.28
UPF3B-203ENST00000478840 ORAI3Q9BRQ5 295 aa7.08□□□□□ -1.28
UPF3B-203ENST00000478840 DUSP23Q9BVJ7 150 aa7.08□□□□□ -1.28
UPF3B-203ENST00000478840 MTFR1LQ9H019 292 aa7.08□□□□□ -1.28
UPF3B-203ENST00000478840 GFOD1Q9NXC2 390 aa7.08□□□□□ -1.28
UPF3B-203ENST00000478840 G3BP2Q9UN86 482 aaKnown RBP7.08□□□□□ -1.28
UPF3B-203ENST00000478840 THRAP3Q9Y2W1 955 aaKnown RBP7.08□□□□□ -1.28
UPF3B-203ENST00000478840 TNPO3Q9Y5L0 923 aaKnown RBP7.08□□□□□ -1.28
UPF3B-203ENST00000478840 CNTNAP4Q9C0A0 1308 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 TCRBV16S1A1N1A0A5B0 115 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 LRRN2O75325 713 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 ITIH2P19823 946 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 MAP4P27816 1152 aaKnown RBP7.07□□□□□ -1.28
UPF3B-203ENST00000478840 ADGRE1Q14246 886 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 PPP2R5DQ14738 602 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 HSP90AB2PQ58FF8 381 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms