RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-212ENST00000477520 ZNF157P51786 506 aaPredicted RBP5.66□□□□□ -1.5
PTCD3-212ENST00000477520 CBX1P83916 185 aa5.66□□□□□ -1.5
PTCD3-212ENST00000477520 ZP2Q05996 745 aa5.66□□□□□ -1.5
PTCD3-212ENST00000477520 IKZF1Q13422 519 aa5.66□□□□□ -1.5
PTCD3-212ENST00000477520 KIF4BQ2VIQ3 1234 aa5.66□□□□□ -1.5
PTCD3-212ENST00000477520 CC2D1BQ5T0F9 858 aaKnown RBP5.66□□□□□ -1.5
PTCD3-212ENST00000477520 FAM214BQ7L5A3 538 aa5.66□□□□□ -1.5
PTCD3-212ENST00000477520 TXNDC2Q86VQ3 553 aa5.66□□□□□ -1.5
PTCD3-212ENST00000477520 GAS2L3Q86XJ1 694 aa5.66□□□□□ -1.5
PTCD3-212ENST00000477520 SYAP1Q96A49 352 aaPredicted RBP5.66□□□□□ -1.5
PTCD3-212ENST00000477520 PRDM10Q9NQV6 1147 aa5.66□□□□□ -1.5
PTCD3-212ENST00000477520 SPTLC3Q9NUV7 552 aa5.66□□□□□ -1.5
PTCD3-212ENST00000477520 DDX49Q9Y6V7 483 aaKnown RBP5.66□□□□□ -1.5
PTCD3-212ENST00000477520 MORC2Q9Y6X9 1032 aaPredicted RBP5.66□□□□□ -1.5
PTCD3-212ENST00000477520 MYO5BQ9ULV0 1848 aa5.66□□□□□ -1.5
PTCD3-212ENST00000477520 USP47Q96K76 1375 aa5.66□□□□□ -1.5
PTCD3-212ENST00000477520 PLEKHH1Q9ULM0 1364 aa5.66□□□□□ -1.5
PTCD3-212ENST00000477520 ZFYVE9O95405 1425 aa5.65□□□□□ -1.5
PTCD3-212ENST00000477520 SLIT1O75093 1534 aa5.65□□□□□ -1.5
PTCD3-212ENST00000477520 CTIFO43310 598 aaKnown RBP5.65□□□□□ -1.5
PTCD3-212ENST00000477520 FAM13AO94988 1023 aa5.65□□□□□ -1.5
PTCD3-212ENST00000477520 HMGB1P09429 215 aaKnown RBP5.65□□□□□ -1.5
PTCD3-212ENST00000477520 MCCP23508 829 aa5.65□□□□□ -1.5
PTCD3-212ENST00000477520 KCNJ4P48050 445 aa5.65□□□□□ -1.5
PTCD3-212ENST00000477520 XPCQ01831 940 aaPredicted RBP5.65□□□□□ -1.5
PTCD3-212ENST00000477520 FAAP100Q0VG06 881 aa5.65□□□□□ -1.5
PTCD3-212ENST00000477520 SPACA3Q8IXA5 215 aa5.65□□□□□ -1.5
PTCD3-212ENST00000477520 TRMT2AQ8IZ69 625 aaKnown RBP5.65□□□□□ -1.5
PTCD3-212ENST00000477520 MNS1Q8NEH6 495 aa5.65□□□□□ -1.5
PTCD3-212ENST00000477520 TNPO1Q92973 898 aaKnown RBP5.65□□□□□ -1.5
PTCD3-212ENST00000477520 ISL2Q96A47 359 aa5.65□□□□□ -1.5
PTCD3-212ENST00000477520 PBXIP1Q96AQ6 731 aa5.65□□□□□ -1.5
PTCD3-212ENST00000477520 PCOLCE2Q9UKZ9 415 aa5.65□□□□□ -1.5
PTCD3-212ENST00000477520 HDAC5Q9UQL6 1122 aa5.65□□□□□ -1.5
PTCD3-212ENST00000477520 SNX11Q9Y5W9 270 aa5.65□□□□□ -1.5
PTCD3-212ENST00000477520 NKTRP30414 1462 aaKnown RBP5.64□□□□□ -1.51
PTCD3-212ENST00000477520 RALGAPBQ86X10 1494 aa5.64□□□□□ -1.51
PTCD3-212ENST00000477520 LMTK3Q96Q04 1460 aa5.64□□□□□ -1.51
PTCD3-212ENST00000477520 SCAF11Q99590 1463 aaKnown RBP5.64□□□□□ -1.51
PTCD3-212ENST00000477520 ARHGAP23Q9P227 1491 aa5.64□□□□□ -1.51
PTCD3-212ENST00000477520 GLI1P08151 1106 aa5.64□□□□□ -1.51
PTCD3-212ENST00000477520 SLFN14P0C7P3 912 aa5.64□□□□□ -1.51
PTCD3-212ENST00000477520 TNNT3P45378 269 aaPredicted RBP5.64□□□□□ -1.51
PTCD3-212ENST00000477520 LRSAM1Q6UWE0 723 aa5.64□□□□□ -1.51
PTCD3-212ENST00000477520 KRT222Q8N1A0 295 aa5.64□□□□□ -1.51
PTCD3-212ENST00000477520 ASB11Q8WXH4 323 aa5.64□□□□□ -1.51
PTCD3-212ENST00000477520 CHMP4AQ9BY43 222 aa5.64□□□□□ -1.51
PTCD3-212ENST00000477520 EHD4Q9H223 541 aa5.64□□□□□ -1.51
PTCD3-212ENST00000477520 ABCB6Q9NP58 842 aa5.64□□□□□ -1.51
PTCD3-212ENST00000477520 RBM28Q9NW13 759 aaKnown RBP5.64□□□□□ -1.51
PTCD3-212ENST00000477520 PPLO60437 1756 aa5.64□□□□□ -1.51
PTCD3-212ENST00000477520 MYOM2P54296 1465 aa5.64□□□□□ -1.51
PTCD3-212ENST00000477520 E9PSI1 815 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 KIF1CO43896 1103 aaKnown RBP5.63□□□□□ -1.51
PTCD3-212ENST00000477520 SSFA2P28290 1259 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 LTKP29376 864 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 HSPA2P54652 639 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 SLFN5Q08AF3 891 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 NOLC1Q14978 699 aaKnown RBP eCLIP5.63□□□□□ -1.51
PTCD3-212ENST00000477520 TERF2Q15554 542 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 NKPD1Q17RQ9 610 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 NBPF8Q3BBV2 869 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 MPZL3Q6UWV2 235 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 SLC26A8Q96RN1 970 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 MYCBPQ99417 103 aaPredicted RBP5.63□□□□□ -1.51
PTCD3-212ENST00000477520 KCNK12Q9HB15 430 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 C19orf73Q9NVV2 129 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 CWC15Q9P013 229 aaKnown RBP5.63□□□□□ -1.51
PTCD3-212ENST00000477520 RAPGEFL1Q9UHV5 662 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 DDX41Q9UJV9 622 aaKnown RBP5.63□□□□□ -1.51
PTCD3-212ENST00000477520 PAXBP1Q9Y5B6 917 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 ZNF521Q96K83 1311 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 PLEKHG1Q9ULL1 1385 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 NEXMIFQ5QGS0 1516 aa5.63□□□□□ -1.51
PTCD3-212ENST00000477520 HTATSF1O43719 755 aaKnown RBP5.62□□□□□ -1.51
PTCD3-212ENST00000477520 PLIN1O60240 522 aa5.62□□□□□ -1.51
PTCD3-212ENST00000477520 REC8O95072 547 aa5.62□□□□□ -1.51
PTCD3-212ENST00000477520 GSTP1P09211 210 aaKnown RBP5.62□□□□□ -1.51
PTCD3-212ENST00000477520 INHBBP09529 407 aa5.62□□□□□ -1.51
PTCD3-212ENST00000477520 AFMP43652 599 aa5.62□□□□□ -1.51
PTCD3-212ENST00000477520 PTPN12Q05209 780 aaKnown RBP5.62□□□□□ -1.51
PTCD3-212ENST00000477520 MUM1L1Q5H9M0 696 aa5.62□□□□□ -1.51
PTCD3-212ENST00000477520 TEX35Q5T0J7 233 aa5.62□□□□□ -1.51
PTCD3-212ENST00000477520 AMIGO3Q86WK7 504 aa5.62□□□□□ -1.51
PTCD3-212ENST00000477520 NCAPGQ9BPX3 1015 aa5.62□□□□□ -1.51
PTCD3-212ENST00000477520 TACO1Q9BSH4 297 aaKnown RBP5.62□□□□□ -1.51
PTCD3-212ENST00000477520 NPHS2Q9NP85 383 aa5.62□□□□□ -1.51
PTCD3-212ENST00000477520 ANO2Q9NQ90 1003 aa5.62□□□□□ -1.51
PTCD3-212ENST00000477520 TBX22Q9Y458 520 aa5.62□□□□□ -1.51
PTCD3-212ENST00000477520 V9GYY5 206 aaPredicted RBP5.62□□□□□ -1.51
PTCD3-212ENST00000477520 IFT172Q9UG01 1749 aa5.62□□□□□ -1.51
PTCD3-212ENST00000477520 NPIPB6E9PJ23 425 aa5.61□□□□□ -1.51
PTCD3-212ENST00000477520 MED14O60244 1454 aa5.61□□□□□ -1.51
PTCD3-212ENST00000477520 NPHP4O75161 1426 aaPredicted RBP5.61□□□□□ -1.51
PTCD3-212ENST00000477520 BAG4O95429 457 aaKnown RBP5.61□□□□□ -1.51
PTCD3-212ENST00000477520 CT47B1P0C2W7 299 aaPredicted RBP5.61□□□□□ -1.51
PTCD3-212ENST00000477520 GPS2Q13227 327 aa5.61□□□□□ -1.51
PTCD3-212ENST00000477520 RABEP1Q15276 862 aa5.61□□□□□ -1.51
PTCD3-212ENST00000477520 ATP2B3Q16720 1220 aa5.61□□□□□ -1.51
PTCD3-212ENST00000477520 ZSCAN23Q3MJ62 389 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms