RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 COL17A1Q9UMD9 1497 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-207ENST00000476169 FAM95CA0A1B0GW59 222 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 TBX1O43435 398 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 RFPL3O75679 317 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 PABPC1P11940 636 aaKnown RBP5.54□□□□□ -1.52
VPS13D-207ENST00000476169 MYCLP1P12525 358 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-207ENST00000476169 CYP7A1P22680 504 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 GRIA2P42262 883 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 RHBDL3P58872 404 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 ZNF445P59923 1031 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 EXOSC10Q01780 885 aaKnown RBP5.54□□□□□ -1.52
VPS13D-207ENST00000476169 NBPF9Q3BBW0 867 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 TM4SF20Q53R12 229 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 BRDTQ58F21 947 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-207ENST00000476169 PAOXQ6QHF9 649 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 NSMFQ6X4W1 530 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 TRIM59Q8IWR1 403 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 SMC5Q8IY18 1101 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 BRF1Q92994 677 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 RCC1LQ96I51 464 aaKnown RBP5.54□□□□□ -1.52
VPS13D-207ENST00000476169 MRGPRX3Q96LB0 322 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 MYRFLQ96LU7 910 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 PSMG3-AS1Q96PY0 264 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 GEMIN8Q9NWZ8 242 aaKnown RBP5.54□□□□□ -1.52
VPS13D-207ENST00000476169 CGGBP1Q9UFW8 167 aaPredicted RBP5.54□□□□□ -1.52
VPS13D-207ENST00000476169 MCM8Q9UJA3 840 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 EMC9Q9Y3B6 208 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 FHOD1Q9Y613 1164 aa5.54□□□□□ -1.52
VPS13D-207ENST00000476169 A0A087WZG4 1122 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 PLIN1O60240 522 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 KCNH1O95259 989 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 VIL1P09327 827 aaKnown RBP5.53□□□□□ -1.52
VPS13D-207ENST00000476169 COL8A1P27658 744 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 ADGRE1Q14246 886 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 MBTPS1Q14703 1052 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 PPP2R5DQ14738 602 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 NFKBIBQ15653 356 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 FNDC3BQ53EP0 1204 aaKnown RBP5.53□□□□□ -1.52
VPS13D-207ENST00000476169 SEZ6L2Q6UXD5 910 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 TICAM2Q86XR7 235 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 FAM20CQ8IXL6 584 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 ARHGEF39Q8N4T4 335 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 GIMAP7Q8NHV1 300 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 BTN2A2Q8WVV5 523 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 TSR2Q969E8 191 aaKnown RBP5.53□□□□□ -1.52
VPS13D-207ENST00000476169 OSBP2Q969R2 916 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 C8orf48Q96LL4 319 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 MRPL4Q9BYD3 311 aaKnown RBP5.53□□□□□ -1.52
VPS13D-207ENST00000476169 PRDM14Q9GZV8 571 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 KCNF1Q9H3M0 494 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 NOL6Q9H6R4 1146 aaKnown RBP5.53□□□□□ -1.52
VPS13D-207ENST00000476169 ADAMTS8Q9UP79 889 aa5.53□□□□□ -1.52
VPS13D-207ENST00000476169 THRAP3Q9Y2W1 955 aaKnown RBP5.53□□□□□ -1.52
VPS13D-207ENST00000476169 DNAJC25-GNG10A0A024R161 153 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 WIPF1O43516 503 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 LRRN2O75325 713 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 EOMESO95936 686 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 SOX5P35711 763 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 NFKB2Q00653 900 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 OS9Q13438 667 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-207ENST00000476169 SNW1Q13573 536 aaKnown RBP5.52□□□□□ -1.53
VPS13D-207ENST00000476169 WWC2Q6AWC2 1192 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 GTF2IRD2BQ6EKJ0 949 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 GTF2IRD2Q86UP8 949 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 RAVER1Q8IY67 606 aaKnown RBP5.52□□□□□ -1.53
VPS13D-207ENST00000476169 ARMC10Q8N2F6 343 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 FIBCD1Q8N539 461 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 UBR7Q8N806 425 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 SYTL5Q8TDW5 730 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-207ENST00000476169 SCARF2Q96GP6 870 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-207ENST00000476169 MEGF10Q96KG7 1140 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 ZDHHC15Q96MV8 337 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 RPS6KC1Q96S38 1066 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 DSCC1Q9BVC3 393 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 DUSP23Q9BVJ7 150 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 FAM126AQ9BYI3 521 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-207ENST00000476169 C1GALT1Q9NS00 363 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 GFOD1Q9NXC2 390 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 PRR13Q9NZ81 148 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 SFMBT1Q9UHJ3 866 aa5.52□□□□□ -1.53
VPS13D-207ENST00000476169 DIS3Q9Y2L1 958 aaKnown RBP5.52□□□□□ -1.53
VPS13D-207ENST00000476169 ALG1L2C9J202 215 aa5.51□□□□□ -1.53
VPS13D-207ENST00000476169 CREB3O43889 395 aa5.51□□□□□ -1.53
VPS13D-207ENST00000476169 LEFTY1O75610 366 aa5.51□□□□□ -1.53
VPS13D-207ENST00000476169 CAPNS1P04632 268 aa5.51□□□□□ -1.53
VPS13D-207ENST00000476169 KCNJ6P48051 423 aa5.51□□□□□ -1.53
VPS13D-207ENST00000476169 GRB10Q13322 594 aa5.51□□□□□ -1.53
VPS13D-207ENST00000476169 PPP4R4Q6NUP7 873 aa5.51□□□□□ -1.53
VPS13D-207ENST00000476169 BEND4Q6ZU67 534 aa5.51□□□□□ -1.53
VPS13D-207ENST00000476169 TXNRD3Q86VQ6 643 aa5.51□□□□□ -1.53
VPS13D-207ENST00000476169 DDX42Q86XP3 938 aaKnown RBP eCLIP5.51□□□□□ -1.53
VPS13D-207ENST00000476169 THNSL2Q86YJ6 484 aa5.51□□□□□ -1.53
VPS13D-207ENST00000476169 DZIP1LQ8IYY4 767 aaKnown RBP5.51□□□□□ -1.53
VPS13D-207ENST00000476169 ATL2Q8NHH9 583 aa5.51□□□□□ -1.53
VPS13D-207ENST00000476169 COX4I2Q96KJ9 171 aa5.51□□□□□ -1.53
VPS13D-207ENST00000476169 CLUHP3Q96NS8 147 aa5.51□□□□□ -1.53
VPS13D-207ENST00000476169 PCGF6Q9BYE7 350 aa5.51□□□□□ -1.53
VPS13D-207ENST00000476169 CAAP1Q9H8G2 361 aa5.51□□□□□ -1.53
VPS13D-207ENST00000476169 PRDM5Q9NQX1 630 aaPredicted RBP5.51□□□□□ -1.53
VPS13D-207ENST00000476169 KCNH3Q9ULD8 1083 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms