RNA–Protein interactions for RNA: ENST00000474157.1

GPNMB-209, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 513 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-209ENST00000474157 TOMM22Q9NS69 142 aa8.43□□□□□ -1.06
GPNMB-209ENST00000474157 RRP15Q9Y3B9 282 aaKnown RBP8.43□□□□□ -1.06
GPNMB-209ENST00000474157 SPATA31A3Q5VYP0 1347 aa8.43□□□□□ -1.06
GPNMB-209ENST00000474157 CEP350Q5VT06 3117 aa8.43□□□□□ -1.06
GPNMB-209ENST00000474157 KDRP35968 1356 aa8.43□□□□□ -1.06
GPNMB-209ENST00000474157 ANKRD30AQ9BXX3 1397 aa8.43□□□□□ -1.06
GPNMB-209ENST00000474157 TMEM131LA2VDJ0 1609 aa8.43□□□□□ -1.06
GPNMB-209ENST00000474157 A0A096LPE4 126 aa8.42□□□□□ -1.06
GPNMB-209ENST00000474157 A0A1W2PPZ6 126 aa8.42□□□□□ -1.06
GPNMB-209ENST00000474157 ERICH4A6NGS2 130 aa8.42□□□□□ -1.06
GPNMB-209ENST00000474157 ALAS2P22557 587 aa8.42□□□□□ -1.06
GPNMB-209ENST00000474157 ST13P50502 369 aaKnown RBP8.42□□□□□ -1.06
GPNMB-209ENST00000474157 SLC5A9Q2M3M2 681 aa8.42□□□□□ -1.06
GPNMB-209ENST00000474157 SYT10Q6XYQ8 523 aa8.42□□□□□ -1.06
GPNMB-209ENST00000474157 METTL16Q86W50 562 aaKnown RBP8.42□□□□□ -1.06
GPNMB-209ENST00000474157 HSCBQ8IWL3 235 aa8.42□□□□□ -1.06
GPNMB-209ENST00000474157 CACTIN-AS1Q8N1I8 211 aa8.42□□□□□ -1.06
GPNMB-209ENST00000474157 DRAXINQ8NBI3 349 aaPredicted RBP8.42□□□□□ -1.06
GPNMB-209ENST00000474157 ZCRB1Q8TBF4 217 aaKnown RBP8.42□□□□□ -1.06
GPNMB-209ENST00000474157 DNAAF4Q8WXU2 420 aa8.42□□□□□ -1.06
GPNMB-209ENST00000474157 PLEKHH1Q9ULM0 1364 aa8.42□□□□□ -1.06
GPNMB-209ENST00000474157 PXDNQ92626 1479 aa8.41□□□□□ -1.06
GPNMB-209ENST00000474157 FAM83GA6ND36 823 aa8.41□□□□□ -1.06
GPNMB-209ENST00000474157 EPXP11678 715 aa8.41□□□□□ -1.06
GPNMB-209ENST00000474157 ITPKAP23677 461 aa8.41□□□□□ -1.06
GPNMB-209ENST00000474157 ERCC5P28715 1186 aaPredicted RBP8.41□□□□□ -1.06
GPNMB-209ENST00000474157 NCBP1Q09161 790 aaKnown RBP8.41□□□□□ -1.06
GPNMB-209ENST00000474157 GRIK3Q13003 919 aa8.41□□□□□ -1.06
GPNMB-209ENST00000474157 SDCCAG8Q86SQ7 713 aaPredicted RBP8.41□□□□□ -1.06
GPNMB-209ENST00000474157 NT5DC4Q86YG4 428 aa8.41□□□□□ -1.06
GPNMB-209ENST00000474157 NME8Q8N427 588 aa8.41□□□□□ -1.06
GPNMB-209ENST00000474157 NUDT8Q8WV74 236 aa8.41□□□□□ -1.06
GPNMB-209ENST00000474157 EXOC4Q96A65 974 aa8.41□□□□□ -1.06
GPNMB-209ENST00000474157 MAF1Q9H063 256 aa8.41□□□□□ -1.06
GPNMB-209ENST00000474157 HOMER3Q9NSC5 361 aa8.41□□□□□ -1.06
GPNMB-209ENST00000474157 FRRS1LQ9P0K9 344 aa8.41□□□□□ -1.06
GPNMB-209ENST00000474157 PPM1HQ9ULR3 514 aa8.41□□□□□ -1.06
GPNMB-209ENST00000474157 TRIM33Q9UPN9 1127 aa8.41□□□□□ -1.06
GPNMB-209ENST00000474157 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.4□□□□□ -1.06
GPNMB-209ENST00000474157 A0A087WUV0 522 aaPredicted RBP8.4□□□□□ -1.06
GPNMB-209ENST00000474157 FBXO24O75426 580 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 TUBB4AP04350 444 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 CCT2P78371 535 aaKnown RBP8.4□□□□□ -1.06
GPNMB-209ENST00000474157 NEDD9Q14511 834 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 RASA3Q14644 834 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 LCE2CQ5TA81 110 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 LRSAM1Q6UWE0 723 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 ADAMTSL4Q6UY14 1074 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 KRBA2Q6ZNG9 492 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 C1orf229Q6ZS94 237 aaPredicted RBP8.4□□□□□ -1.06
GPNMB-209ENST00000474157 KRT28Q7Z3Y7 464 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 KIAA1328Q86T90 577 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 MORC1Q86VD1 984 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 ANKRD18AQ8IVF6 992 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 CCDC191Q8NCU4 936 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 DDX11Q96FC9 970 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 CFAP53Q96M91 514 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 LZTS2Q9BRK4 669 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 SYT17Q9BSW7 474 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 LACRTQ9GZZ8 138 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 MUC3BQ9H195 1237 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 ZNF576Q9H609 170 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 GNL3LQ9NVN8 582 aaKnown RBP8.4□□□□□ -1.06
GPNMB-209ENST00000474157 ZNF446Q9NWS9 450 aa8.4□□□□□ -1.06
GPNMB-209ENST00000474157 UTP6Q9NYH9 597 aaKnown RBP8.4□□□□□ -1.06
GPNMB-209ENST00000474157 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.4□□□□□ -1.06
GPNMB-209ENST00000474157 BRWD3Q6RI45 1802 aa8.4□□□□□ -1.07
GPNMB-209ENST00000474157 XRN1Q8IZH2 1706 aaKnown RBP8.4□□□□□ -1.07
GPNMB-209ENST00000474157 NAIPQ13075 1403 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 TONSLQ96HA7 1378 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 RAB3GAP2Q9H2M9 1393 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 ROBO2Q9HCK4 1378 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 RGS9O75916 674 aaPredicted RBP8.39□□□□□ -1.07
GPNMB-209ENST00000474157 CT47B1P0C2W7 299 aaPredicted RBP8.39□□□□□ -1.07
GPNMB-209ENST00000474157 GCFC2P16383 781 aaKnown RBP8.39□□□□□ -1.07
GPNMB-209ENST00000474157 PTPRAP18433 802 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 CORO7P57737 925 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 PTPN12Q05209 780 aaKnown RBP8.39□□□□□ -1.07
GPNMB-209ENST00000474157 GDF6Q6KF10 455 aaPredicted RBP8.39□□□□□ -1.07
GPNMB-209ENST00000474157 TPTE2Q6XPS3 522 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 TRIM74Q86UV6 250 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 TRIM73Q86UV7 250 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 SAMD3Q8N6K7 520 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 BSNDQ8WZ55 320 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 FAXDC2Q96IV6 333 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 KIF2CQ99661 725 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 CRACR2AQ9BSW2 395 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 THUMPD2Q9BTF0 503 aaKnown RBP8.39□□□□□ -1.07
GPNMB-209ENST00000474157 POLR3CQ9BUI4 534 aaPredicted RBP8.39□□□□□ -1.07
GPNMB-209ENST00000474157 TRIM6Q9C030 488 aaPredicted RBP8.39□□□□□ -1.07
GPNMB-209ENST00000474157 IRAK4Q9NWZ3 460 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 BTG4Q9NY30 223 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 USP25Q9UHP3 1055 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 STARD13Q9Y3M8 1113 aa8.39□□□□□ -1.07
GPNMB-209ENST00000474157 SPATA31A5Q5VU36 1347 aa8.38□□□□□ -1.07
GPNMB-209ENST00000474157 SPATA31A7Q8IWB4 1347 aa8.38□□□□□ -1.07
GPNMB-209ENST00000474157 E9PCH4 1651 aa8.38□□□□□ -1.07
GPNMB-209ENST00000474157 ALBP02768 609 aa8.38□□□□□ -1.07
GPNMB-209ENST00000474157 NBPF7P0C2Y1 421 aaPredicted RBP8.38□□□□□ -1.07
GPNMB-209ENST00000474157 VDRP11473 427 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms