RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 BBS9Q3SYG4 887 aa7.07□□□□□ -1.28
CCDC88A-210ENST00000468534 TTLL10Q6ZVT0 673 aa7.07□□□□□ -1.28
CCDC88A-210ENST00000468534 CNNM2Q9H8M5 875 aa7.07□□□□□ -1.28
CCDC88A-210ENST00000468534 TEX51A0A1B0GUA7 166 aa7.06□□□□□ -1.28
CCDC88A-210ENST00000468534 FAM86C2PA6NEL3 165 aa7.06□□□□□ -1.28
CCDC88A-210ENST00000468534 SIGLEC6O43699 453 aa7.06□□□□□ -1.28
CCDC88A-210ENST00000468534 NRDCO43847 1150 aa7.06□□□□□ -1.28
CCDC88A-210ENST00000468534 SRSF3P84103 164 aaKnown RBP7.06□□□□□ -1.28
CCDC88A-210ENST00000468534 ZNF326Q5BKZ1 582 aaKnown RBP7.06□□□□□ -1.28
CCDC88A-210ENST00000468534 CDCP2Q5VXM1 449 aa7.06□□□□□ -1.28
CCDC88A-210ENST00000468534 HHIPL1Q96JK4 782 aa7.06□□□□□ -1.28
CCDC88A-210ENST00000468534 BCL11AQ9H165 835 aa7.06□□□□□ -1.28
CCDC88A-210ENST00000468534 EHMT1Q9H9B1 1298 aa7.06□□□□□ -1.28
CCDC88A-210ENST00000468534 GCM1Q9NP62 436 aa7.06□□□□□ -1.28
CCDC88A-210ENST00000468534 KIR2DL1P43626 348 aaPredicted RBP7.05□□□□□ -1.28
CCDC88A-210ENST00000468534 KIR2DL2P43627 348 aaPredicted RBP7.05□□□□□ -1.28
CCDC88A-210ENST00000468534 RBM25P49756 843 aaKnown RBP7.05□□□□□ -1.28
CCDC88A-210ENST00000468534 RAD51AP2Q09MP3 1159 aa7.05□□□□□ -1.28
CCDC88A-210ENST00000468534 LINC00116Q8NCU8 138 aa7.05□□□□□ -1.28
CCDC88A-210ENST00000468534 ZNF428Q96B54 188 aa7.05□□□□□ -1.28
CCDC88A-210ENST00000468534 CHST7Q9NS84 486 aa7.05□□□□□ -1.28
CCDC88A-210ENST00000468534 GFOD1Q9NXC2 390 aa7.05□□□□□ -1.28
CCDC88A-210ENST00000468534 FBXL21Q9UKT6 434 aa7.05□□□□□ -1.28
CCDC88A-210ENST00000468534 KCTD3Q9Y597 815 aa7.05□□□□□ -1.28
CCDC88A-210ENST00000468534 ZNF165P49910 485 aa7.04□□□□□ -1.28
CCDC88A-210ENST00000468534 RTP1P59025 263 aa7.04□□□□□ -1.28
CCDC88A-210ENST00000468534 SSPNQ14714 243 aa7.04□□□□□ -1.28
CCDC88A-210ENST00000468534 KIR3DS1Q14943 382 aa7.04□□□□□ -1.28
CCDC88A-210ENST00000468534 TMEM192Q8IY95 271 aa7.04□□□□□ -1.28
CCDC88A-210ENST00000468534 FAM9AQ8IZU1 332 aaPredicted RBP7.04□□□□□ -1.28
CCDC88A-210ENST00000468534 NKD1Q969G9 470 aa7.04□□□□□ -1.28
CCDC88A-210ENST00000468534 SLC6A18Q96N87 628 aa7.04□□□□□ -1.28
CCDC88A-210ENST00000468534 PLCD4Q9BRC7 762 aa7.04□□□□□ -1.28
CCDC88A-210ENST00000468534 POLR3GLQ9BT43 218 aa7.04□□□□□ -1.28
CCDC88A-210ENST00000468534 CDADC1Q9BWV3 514 aa7.04□□□□□ -1.28
CCDC88A-210ENST00000468534 SIRT5Q9NXA8 310 aa7.04□□□□□ -1.28
CCDC88A-210ENST00000468534 GPR55Q9Y2T6 319 aaPredicted RBP7.04□□□□□ -1.28
CCDC88A-210ENST00000468534 NME1P15531 152 aaKnown RBP7.03□□□□□ -1.28
CCDC88A-210ENST00000468534 BMP7P18075 431 aa7.03□□□□□ -1.28
CCDC88A-210ENST00000468534 PI3P19957 117 aa7.03□□□□□ -1.28
CCDC88A-210ENST00000468534 MRPL58Q14197 206 aaKnown RBP7.03□□□□□ -1.28
CCDC88A-210ENST00000468534 ZNF385BQ569K4 471 aa7.03□□□□□ -1.28
CCDC88A-210ENST00000468534 MBD1Q9UIS9 605 aaPredicted RBP7.03□□□□□ -1.28
CCDC88A-210ENST00000468534 PCDHB12Q9Y5F1 795 aa7.03□□□□□ -1.28
CCDC88A-210ENST00000468534 RFXAPO00287 272 aa7.02□□□□□ -1.29
CCDC88A-210ENST00000468534 VIPR1P32241 457 aa7.02□□□□□ -1.29
CCDC88A-210ENST00000468534 EPHB3P54753 998 aa7.02□□□□□ -1.29
CCDC88A-210ENST00000468534 CTSWP56202 376 aa7.02□□□□□ -1.29
CCDC88A-210ENST00000468534 TMCO4Q5TGY1 634 aa7.02□□□□□ -1.29
CCDC88A-210ENST00000468534 REXO1Q8N1G1 1221 aaKnown RBP7.02□□□□□ -1.29
CCDC88A-210ENST00000468534 FCRL2Q96LA5 508 aaPredicted RBP7.02□□□□□ -1.29
CCDC88A-210ENST00000468534 ZCCHC4Q9H5U6 513 aa7.02□□□□□ -1.29
CCDC88A-210ENST00000468534 CRTAC1Q9NQ79 661 aa7.02□□□□□ -1.29
CCDC88A-210ENST00000468534 TAF6LQ9Y6J9 622 aa7.02□□□□□ -1.29
CCDC88A-210ENST00000468534 B8ZZF3 427 aa7.01□□□□□ -1.29
CCDC88A-210ENST00000468534 HOXA5P20719 270 aa7.01□□□□□ -1.29
CCDC88A-210ENST00000468534 CCNFP41002 786 aa7.01□□□□□ -1.29
CCDC88A-210ENST00000468534 MFAP1P55081 439 aaKnown RBP7.01□□□□□ -1.29
CCDC88A-210ENST00000468534 HSF5Q4G112 596 aaPredicted RBP7.01□□□□□ -1.29
CCDC88A-210ENST00000468534 TCERG1LQ5VWI1 586 aa7.01□□□□□ -1.29
CCDC88A-210ENST00000468534 CRTC3Q6UUV7 619 aa7.01□□□□□ -1.29
CCDC88A-210ENST00000468534 TMEM87AQ8NBN3 555 aa7.01□□□□□ -1.29
CCDC88A-210ENST00000468534 PANK1Q8TE04 598 aa7.01□□□□□ -1.29
CCDC88A-210ENST00000468534 SLC9A7Q96T83 725 aa7.01□□□□□ -1.29
CCDC88A-210ENST00000468534 IRAK3Q9Y616 596 aa7.01□□□□□ -1.29
CCDC88A-210ENST00000468534 FADS2P1A8MWK0 482 aa7□□□□□ -1.29
CCDC88A-210ENST00000468534 PNLIPP16233 465 aa7□□□□□ -1.29
CCDC88A-210ENST00000468534 CTSKP43235 329 aa7□□□□□ -1.29
CCDC88A-210ENST00000468534 AUHQ13825 339 aaKnown RBP7□□□□□ -1.29
CCDC88A-210ENST00000468534 LRRFIP1Q32MZ4 808 aaKnown RBP7□□□□□ -1.29
CCDC88A-210ENST00000468534 GALNT18Q6P9A2 607 aa7□□□□□ -1.29
CCDC88A-210ENST00000468534 KIAA0825Q8IV33 1275 aa7□□□□□ -1.29
CCDC88A-210ENST00000468534 EAF1Q96JC9 268 aaPredicted RBP7□□□□□ -1.29
CCDC88A-210ENST00000468534 SPON2Q9BUD6 331 aa7□□□□□ -1.29
CCDC88A-210ENST00000468534 DSCC1Q9BVC3 393 aa7□□□□□ -1.29
CCDC88A-210ENST00000468534 NT5C1AQ9BXI3 368 aa7□□□□□ -1.29
CCDC88A-210ENST00000468534 AP5S1Q9NUS5 200 aa7□□□□□ -1.29
CCDC88A-210ENST00000468534 ERVK13-1Q9NX77 482 aa7□□□□□ -1.29
CCDC88A-210ENST00000468534 TNFRSF10DQ9UBN6 386 aa7□□□□□ -1.29
CCDC88A-210ENST00000468534 MEIS3P2A8K0S8 358 aa6.99□□□□□ -1.29
CCDC88A-210ENST00000468534 E9PSI1 815 aa6.99□□□□□ -1.29
CCDC88A-210ENST00000468534 PRRG2O14669 202 aa6.99□□□□□ -1.29
CCDC88A-210ENST00000468534 TNFRSF10CO14798 259 aa6.99□□□□□ -1.29
CCDC88A-210ENST00000468534 PRKCAP17252 672 aa6.99□□□□□ -1.29
CCDC88A-210ENST00000468534 TDRD10Q5VZ19 366 aaKnown RBP6.99□□□□□ -1.29
CCDC88A-210ENST00000468534 NUP43Q8NFH3 380 aa6.99□□□□□ -1.29
CCDC88A-210ENST00000468534 SIGLEC10Q96LC7 697 aa6.99□□□□□ -1.29
CCDC88A-210ENST00000468534 CNTD2Q9H8S5 307 aa6.99□□□□□ -1.29
CCDC88A-210ENST00000468534 PARD6AQ9NPB6 346 aa6.99□□□□□ -1.29
CCDC88A-210ENST00000468534 RAPGEFL1Q9UHV5 662 aa6.99□□□□□ -1.29
CCDC88A-210ENST00000468534 NCANO14594 1321 aa6.99□□□□□ -1.29
CCDC88A-210ENST00000468534 WTIPA6NIX2 430 aaPredicted RBP6.98□□□□□ -1.29
CCDC88A-210ENST00000468534 NUDT19A8MXV4 375 aa6.98□□□□□ -1.29
CCDC88A-210ENST00000468534 ZNF205O95201 554 aa6.98□□□□□ -1.29
CCDC88A-210ENST00000468534 BMP8BP34820 402 aa6.98□□□□□ -1.29
CCDC88A-210ENST00000468534 ARL4AP40617 200 aa6.98□□□□□ -1.29
CCDC88A-210ENST00000468534 RAB3GAP1Q15042 981 aa6.98□□□□□ -1.29
CCDC88A-210ENST00000468534 SLITRK4Q8IW52 837 aa6.98□□□□□ -1.29
CCDC88A-210ENST00000468534 CCDC144CPQ8IYA2 1237 aa6.98□□□□□ -1.29
CCDC88A-210ENST00000468534 FAM177A1Q8N128 213 aaPredicted RBP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms