RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 ADGRF4Q8IZF3 695 aa12.43□□□□□ -0.42
MSX1-202ENST00000468421 WASF1Q92558 559 aa12.43□□□□□ -0.42
MSX1-202ENST00000468421 GPKOWQ92917 476 aaPredicted RBP eCLIP12.43□□□□□ -0.42
MSX1-202ENST00000468421 MTMR8Q96EF0 704 aa12.43□□□□□ -0.42
MSX1-202ENST00000468421 EMILIN3Q9NT22 766 aa12.43□□□□□ -0.42
MSX1-202ENST00000468421 RBM27Q9P2N5 1060 aaKnown RBP12.43□□□□□ -0.42
MSX1-202ENST00000468421 KCNJ14Q9UNX9 436 aa12.43□□□□□ -0.42
MSX1-202ENST00000468421 AFG3L2Q9Y4W6 797 aa12.43□□□□□ -0.42
MSX1-202ENST00000468421 KIF28PB7ZC32 967 aa12.42□□□□□ -0.42
MSX1-202ENST00000468421 WDR46O15213 610 aaKnown RBP12.42□□□□□ -0.42
MSX1-202ENST00000468421 PPP1R11O60927 126 aaPredicted RBP12.42□□□□□ -0.42
MSX1-202ENST00000468421 USP14P54578 494 aa12.42□□□□□ -0.42
MSX1-202ENST00000468421 HMGCS2P54868 508 aa12.42□□□□□ -0.42
MSX1-202ENST00000468421 BACE1P56817 501 aa12.42□□□□□ -0.42
MSX1-202ENST00000468421 SYDE2Q5VT97 1194 aa12.42□□□□□ -0.42
MSX1-202ENST00000468421 TYW1BQ6NUM6 668 aa12.42□□□□□ -0.42
MSX1-202ENST00000468421 LPAR1Q92633 364 aa12.42□□□□□ -0.42
MSX1-202ENST00000468421 RRP36Q96EU6 259 aaKnown RBP12.42□□□□□ -0.42
MSX1-202ENST00000468421 C12orf42Q96LP6 360 aa12.42□□□□□ -0.42
MSX1-202ENST00000468421 GBA2Q9HCG7 927 aaPredicted RBP12.42□□□□□ -0.42
MSX1-202ENST00000468421 FBXO28Q9NVF7 368 aa12.42□□□□□ -0.42
MSX1-202ENST00000468421 RBBP6Q7Z6E9 1792 aaKnown RBP12.41□□□□□ -0.42
MSX1-202ENST00000468421 A0A0G2JMZ2 1700 aa12.41□□□□□ -0.42
MSX1-202ENST00000468421 SPDYE5A6NIY4 337 aa12.41□□□□□ -0.42
MSX1-202ENST00000468421 STXBP3O00186 592 aa12.41□□□□□ -0.42
MSX1-202ENST00000468421 KIF3CO14782 793 aa12.41□□□□□ -0.42
MSX1-202ENST00000468421 CELF2O95319 508 aaKnown RBP12.41□□□□□ -0.42
MSX1-202ENST00000468421 MMP1P03956 469 aa12.41□□□□□ -0.42
MSX1-202ENST00000468421 PDIA4P13667 645 aaKnown RBP12.41□□□□□ -0.42
MSX1-202ENST00000468421 VCAM1P19320 739 aa12.41□□□□□ -0.42
MSX1-202ENST00000468421 GJA5P36382 358 aa12.41□□□□□ -0.42
MSX1-202ENST00000468421 SNAP25P60880 206 aa12.41□□□□□ -0.42
MSX1-202ENST00000468421 NPY5RQ15761 445 aa12.41□□□□□ -0.42
MSX1-202ENST00000468421 FOXD4L6Q3SYB3 417 aaPredicted RBP12.41□□□□□ -0.42
MSX1-202ENST00000468421 FAM173BQ6P4H8 233 aa12.41□□□□□ -0.42
MSX1-202ENST00000468421 FOXD4L3Q6VB84 417 aaPredicted RBP12.41□□□□□ -0.42
MSX1-202ENST00000468421 HEATR3Q7Z4Q2 680 aa12.41□□□□□ -0.42
MSX1-202ENST00000468421 ERO1BQ86YB8 467 aa12.41□□□□□ -0.42
MSX1-202ENST00000468421 RGS22Q8NE09 1264 aa12.41□□□□□ -0.42
MSX1-202ENST00000468421 OTUD5Q96G74 571 aa12.41□□□□□ -0.42
MSX1-202ENST00000468421 PHF20Q9BVI0 1012 aa12.41□□□□□ -0.42
MSX1-202ENST00000468421 GPBP1L1Q9HC44 474 aaPredicted RBP12.41□□□□□ -0.42
MSX1-202ENST00000468421 PRR12Q9ULL5 1215 aa12.41□□□□□ -0.42
MSX1-202ENST00000468421 C19orf81C9J6K1 198 aa12.4□□□□□ -0.42
MSX1-202ENST00000468421 ADAMTS3O15072 1205 aa12.4□□□□□ -0.42
MSX1-202ENST00000468421 PLA2G6O60733 806 aa12.4□□□□□ -0.42
MSX1-202ENST00000468421 TAL1P17542 331 aaPredicted RBP12.4□□□□□ -0.42
MSX1-202ENST00000468421 STAT2P52630 851 aa12.4□□□□□ -0.42
MSX1-202ENST00000468421 KIF23Q02241 960 aaPredicted RBP12.4□□□□□ -0.42
MSX1-202ENST00000468421 PPATQ06203 517 aa12.4□□□□□ -0.42
MSX1-202ENST00000468421 IKQ13123 557 aaPredicted RBP12.4□□□□□ -0.42
MSX1-202ENST00000468421 TRIM29Q14134 588 aa12.4□□□□□ -0.42
MSX1-202ENST00000468421 CDC37Q16543 378 aaPredicted RBP12.4□□□□□ -0.42
MSX1-202ENST00000468421 QRICH1Q2TAL8 776 aa12.4□□□□□ -0.42
MSX1-202ENST00000468421 SH3D19Q5HYK7 790 aa12.4□□□□□ -0.42
MSX1-202ENST00000468421 CST9Q5W186 159 aa12.4□□□□□ -0.42
MSX1-202ENST00000468421 MCTP1Q6DN14 999 aa12.4□□□□□ -0.42
MSX1-202ENST00000468421 OXER1Q8TDS5 423 aa12.4□□□□□ -0.42
MSX1-202ENST00000468421 RPAP3Q9H6T3 665 aaPredicted RBP12.4□□□□□ -0.42
MSX1-202ENST00000468421 BARHL2Q9NY43 387 aa12.4□□□□□ -0.42
MSX1-202ENST00000468421 SEC63Q9UGP8 760 aaKnown RBP12.4□□□□□ -0.42
MSX1-202ENST00000468421 PNMA6FA0A0J9YX94 578 aa12.39□□□□□ -0.43
MSX1-202ENST00000468421 IRF6O14896 467 aa12.39□□□□□ -0.43
MSX1-202ENST00000468421 ZBTB5O15062 677 aa12.39□□□□□ -0.43
MSX1-202ENST00000468421 BAG4O95429 457 aaKnown RBP12.39□□□□□ -0.43
MSX1-202ENST00000468421 FKBP1BP68106 108 aa12.39□□□□□ -0.43
MSX1-202ENST00000468421 PPIL2Q13356 520 aa12.39□□□□□ -0.43
MSX1-202ENST00000468421 SAMD1Q6SPF0 538 aaPredicted RBP12.39□□□□□ -0.43
MSX1-202ENST00000468421 CLEC17AQ6ZS10 378 aa12.39□□□□□ -0.43
MSX1-202ENST00000468421 FAM160B2Q86V87 743 aa12.39□□□□□ -0.43
MSX1-202ENST00000468421 DIS3L2Q8IYB7 885 aaKnown RBP12.39□□□□□ -0.43
MSX1-202ENST00000468421 CHURC1Q8WUH1 139 aa12.39□□□□□ -0.43
MSX1-202ENST00000468421 COA7Q96BR5 231 aa12.39□□□□□ -0.43
MSX1-202ENST00000468421 OPTNQ96CV9 577 aa12.39□□□□□ -0.43
MSX1-202ENST00000468421 RANBP17Q9H2T7 1088 aaKnown RBP12.39□□□□□ -0.43
MSX1-202ENST00000468421 SH3GLB2Q9NR46 395 aa12.39□□□□□ -0.43
MSX1-202ENST00000468421 FEM1BQ9UK73 627 aa12.39□□□□□ -0.43
MSX1-202ENST00000468421 KCNH4Q9UQ05 1017 aa12.39□□□□□ -0.43
MSX1-202ENST00000468421 BTBD18B2RXH4 712 aa12.38□□□□□ -0.43
MSX1-202ENST00000468421 hCG_1984214I3L0E3 225 aa12.38□□□□□ -0.43
MSX1-202ENST00000468421 XBP1P17861 261 aa12.38□□□□□ -0.43
MSX1-202ENST00000468421 NR5A1Q13285 461 aa12.38□□□□□ -0.43
MSX1-202ENST00000468421 ZNF713Q8N859 430 aaPredicted RBP12.38□□□□□ -0.43
MSX1-202ENST00000468421 C2orf69Q8N8R5 385 aa12.38□□□□□ -0.43
MSX1-202ENST00000468421 KIFC2Q96AC6 838 aa12.38□□□□□ -0.43
MSX1-202ENST00000468421 SLF1Q9BQI6 1058 aa12.38□□□□□ -0.43
MSX1-202ENST00000468421 TANGO6Q9C0B7 1094 aa12.38□□□□□ -0.43
MSX1-202ENST00000468421 ZSCAN16Q9H4T2 348 aaPredicted RBP12.38□□□□□ -0.43
MSX1-202ENST00000468421 TMOD4Q9NZQ9 345 aa12.38□□□□□ -0.43
MSX1-202ENST00000468421 PASKQ96RG2 1323 aa12.37□□□□□ -0.43
MSX1-202ENST00000468421 A0A0G2JLL6 359 aaPredicted RBP12.37□□□□□ -0.43
MSX1-202ENST00000468421 FAM205CA6NFA0 338 aa12.37□□□□□ -0.43
MSX1-202ENST00000468421 UNCXA6NJT0 531 aa12.37□□□□□ -0.43
MSX1-202ENST00000468421 CXCL11O14625 94 aa12.37□□□□□ -0.43
MSX1-202ENST00000468421 FLOT1O75955 427 aa12.37□□□□□ -0.43
MSX1-202ENST00000468421 U2AF2P26368 475 aaKnown RBP eCLIP12.37□□□□□ -0.43
MSX1-202ENST00000468421 KRT2P35908 639 aa12.37□□□□□ -0.43
MSX1-202ENST00000468421 NAPAP54920 295 aa12.37□□□□□ -0.43
MSX1-202ENST00000468421 NLRP5P59047 1200 aa12.37□□□□□ -0.43
MSX1-202ENST00000468421 DNM1Q05193 864 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms