RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 ERO1BQ86YB8 467 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 CCDC83Q8IWF9 413 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 HSCBQ8IWL3 235 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 PLPP6Q8IY26 295 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 CCDC144CPQ8IYA2 1237 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 LRRC47Q8N1G4 583 aaKnown RBP6.94□□□□□ -1.3
USP39-213ENST00000467885 CCDC82Q8N4S0 544 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 SPRYD3Q8NCJ5 442 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 NSUN7Q8NE18 718 aaKnown RBP6.94□□□□□ -1.3
USP39-213ENST00000467885 NUP133Q8WUM0 1156 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 GTF3C6Q969F1 213 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 CHMP4CQ96CF2 233 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 KCTD12Q96CX2 325 aaKnown RBP6.94□□□□□ -1.3
USP39-213ENST00000467885 GMCL1Q96IK5 515 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 LLPHQ9BRT6 129 aaKnown RBP6.94□□□□□ -1.3
USP39-213ENST00000467885 UBA5Q9GZZ9 404 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 RIOX1Q9H6W3 641 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 VCPKMTQ9H867 229 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 GBA2Q9HCG7 927 aaPredicted RBP6.94□□□□□ -1.3
USP39-213ENST00000467885 PICK1Q9NRD5 415 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 V9GY48 417 aaPredicted RBP6.94□□□□□ -1.3
USP39-213ENST00000467885 MAST2Q6P0Q8 1798 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 SCN4AP35499 1836 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 CCDC196A0A1B0GTZ2 297 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 GOLGA8AA7E2F4 631 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 GOLGA8BA8MQT2 603 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 PRPF3O43395 683 aaKnown RBP6.93□□□□□ -1.3
USP39-213ENST00000467885 DHX16O60231 1041 aaKnown RBP6.93□□□□□ -1.3
USP39-213ENST00000467885 JAK2O60674 1132 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 PPFIA3O75145 1194 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 PLEKHA8P1O95397 391 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 NDUFB10O96000 172 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 SLC16A2P36021 539 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 METAP2P50579 478 aaKnown RBP eCLIP6.93□□□□□ -1.3
USP39-213ENST00000467885 FSTL1Q12841 308 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 DGKZQ13574 1117 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 TTLL12Q14166 644 aaPredicted RBP6.93□□□□□ -1.3
USP39-213ENST00000467885 RTN1Q16799 776 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 GPAT2Q6NUI2 795 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 TMTC3Q6ZXV5 915 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 SAPCD2Q86UD0 394 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 SMC1BQ8NDV3 1235 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 MTMR8Q96EF0 704 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 NUP88Q99567 741 aaPredicted RBP6.93□□□□□ -1.3
USP39-213ENST00000467885 CPVLQ9H3G5 476 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 ZNF408Q9H9D4 720 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 ELP3Q9H9T3 547 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 JMJD4Q9H9V9 463 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 ARHGEF10LQ9HCE6 1279 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 CWC22Q9HCG8 908 aaKnown RBP6.93□□□□□ -1.3
USP39-213ENST00000467885 VAT1LQ9HCJ6 419 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 GPCPD1Q9NPB8 672 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 NAP1L2Q9ULW6 460 aaPredicted RBP6.93□□□□□ -1.3
USP39-213ENST00000467885 ADAMTS5Q9UNA0 930 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 KCNH4Q9UQ05 1017 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 CSADQ9Y600 493 aa6.93□□□□□ -1.3
USP39-213ENST00000467885 BAZ2AQ9UIF9 1905 aaKnown RBP6.93□□□□□ -1.3
USP39-213ENST00000467885 POLR2AP24928 1970 aaKnown RBP6.93□□□□□ -1.3
USP39-213ENST00000467885 TRIM75PA6NK02 468 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 FMNL1O95466 1100 aaPredicted RBP6.92□□□□□ -1.3
USP39-213ENST00000467885 PARP1P09874 1014 aaKnown RBP6.92□□□□□ -1.3
USP39-213ENST00000467885 BMP3P12645 472 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 HOXA7P31268 230 aaPredicted RBP6.92□□□□□ -1.3
USP39-213ENST00000467885 KIF5BP33176 963 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 GNAQP50148 359 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 PPIL2Q13356 520 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 SPRYD7Q5W111 196 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 CATSPERGQ6ZRH7 1159 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 PAXIP1Q6ZW49 1069 aaPredicted RBP6.92□□□□□ -1.3
USP39-213ENST00000467885 KCTD1Q719H9 257 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 MICU3Q86XE3 530 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 ADGRF4Q8IZF3 695 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 SPICE1Q8N0Z3 855 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 DCAF4Q8WV16 495 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 PHKBQ93100 1093 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 OPTNQ96CV9 577 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 SHISA4Q96DD7 197 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 C12orf42Q96LP6 360 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 LZTS2Q9BRK4 669 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 AS3MTQ9HBK9 375 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 RBM28Q9NW13 759 aaKnown RBP6.92□□□□□ -1.3
USP39-213ENST00000467885 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.92□□□□□ -1.3
USP39-213ENST00000467885 MTMR7Q9Y216 660 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 ZDHHC9Q9Y397 364 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.92□□□□□ -1.3
USP39-213ENST00000467885 DDX60LQ5H9U9 1706 aaKnown RBP6.92□□□□□ -1.3
USP39-213ENST00000467885 NID2Q14112 1375 aa6.92□□□□□ -1.3
USP39-213ENST00000467885 TIAM2Q8IVF5 1701 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 A0A0G2JLL6 359 aaPredicted RBP6.91□□□□□ -1.3
USP39-213ENST00000467885 hCG_1642624A0A1W2PR95 340 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 TESPA1A2RU30 521 aaPredicted RBP6.91□□□□□ -1.3
USP39-213ENST00000467885 FAM155AB1AL88 458 aaPredicted RBP6.91□□□□□ -1.3
USP39-213ENST00000467885 TMEM232C9JQI7 657 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 GJB2P29033 226 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 SLC1A4P43007 532 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 USP14P54578 494 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 HMGCS2P54868 508 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 HUNKP57058 714 aa6.91□□□□□ -1.3
USP39-213ENST00000467885 SSRP1Q08945 709 aaKnown RBP6.91□□□□□ -1.3
USP39-213ENST00000467885 MTMR2Q13614 643 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms