RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 GMCL1Q96IK5 515 aa15.37■□□□□ 0.05
COL28A1-206ENST00000465339 MOV10L1Q9BXT6 1211 aaKnown RBP15.37■□□□□ 0.05
COL28A1-206ENST00000465339 KRT23Q9C075 422 aa15.37■□□□□ 0.05
COL28A1-206ENST00000465339 MROH8Q9H579 483 aa15.37■□□□□ 0.05
COL28A1-206ENST00000465339 CNNM2Q9H8M5 875 aa15.37■□□□□ 0.05
COL28A1-206ENST00000465339 SLC15A5A6NIM6 579 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 SLC25A27O95847 323 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 FDX1P10109 184 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 ELNP15502 786 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 PTPREP23469 700 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 RGS2P41220 211 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 SLC1A4P43007 532 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 PTH1RQ03431 593 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 PLS1Q14651 629 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 TMEM132BQ14DG7 1078 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 WDR78Q5VTH9 848 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 RCSD1Q6JBY9 416 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 IQCA1Q86XH1 822 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 CHURC1Q8WUH1 139 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 USP6NLQ92738 828 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 PPP4R2Q9NY27 417 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 ZNFX1Q9P2E3 1918 aaKnown RBP15.36■□□□□ 0.05
COL28A1-206ENST00000465339 NEDD4P46934 1319 aa15.36■□□□□ 0.05
COL28A1-206ENST00000465339 HTTP42858 3142 aa15.35■□□□□ 0.05
COL28A1-206ENST00000465339 PLA2G6O60733 806 aa15.35■□□□□ 0.05
COL28A1-206ENST00000465339 ZBED4O75132 1171 aa15.35■□□□□ 0.05
COL28A1-206ENST00000465339 KDM4AO75164 1064 aa15.35■□□□□ 0.05
COL28A1-206ENST00000465339 CYP2B6P20813 491 aa15.35■□□□□ 0.05
COL28A1-206ENST00000465339 MCCP23508 829 aa15.35■□□□□ 0.05
COL28A1-206ENST00000465339 COPB2P35606 906 aa15.35■□□□□ 0.05
COL28A1-206ENST00000465339 STAT3P40763 770 aa15.35■□□□□ 0.05
COL28A1-206ENST00000465339 MAP2K5Q13163 448 aa15.35■□□□□ 0.05
COL28A1-206ENST00000465339 FAM160B2Q86V87 743 aa15.35■□□□□ 0.05
COL28A1-206ENST00000465339 SKAP1Q86WV1 359 aa15.35■□□□□ 0.05
COL28A1-206ENST00000465339 DGKHQ86XP1 1220 aa15.35■□□□□ 0.05
COL28A1-206ENST00000465339 MAP4K1Q92918 833 aa15.35■□□□□ 0.05
COL28A1-206ENST00000465339 TMEM47Q9BQJ4 181 aa15.35■□□□□ 0.05
COL28A1-206ENST00000465339 B4E1Z4 1266 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 TMEM232C9JQI7 657 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 HMGCRP04035 888 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 INHAP05111 366 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 CCL5P13501 91 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 ERCC3P19447 782 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 STAT2P52630 851 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 MLLT1Q03111 559 aaPredicted RBP15.34■□□□□ 0.05
COL28A1-206ENST00000465339 TRDNQ13061 729 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 CASC1Q6TDU7 716 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 NCAPG2Q86XI2 1143 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 RIOX2Q8IUF8 465 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 ABRAQ8N0Z2 381 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 REPS2Q8NFH8 660 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 DCAF4Q8WV16 495 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 KIFC2Q96AC6 838 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 ESYT1Q9BSJ8 1104 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 ZSWIM5Q9P217 1185 aa15.34■□□□□ 0.05
COL28A1-206ENST00000465339 ZNF214Q9UL59 606 aaPredicted RBP15.34■□□□□ 0.05
COL28A1-206ENST00000465339 CTDP1Q9Y5B0 961 aaPredicted RBP15.34■□□□□ 0.05
COL28A1-206ENST00000465339 POTEFA5A3E0 1075 aa15.33■□□□□ 0.04
COL28A1-206ENST00000465339 ATP2A1O14983 1001 aa15.33■□□□□ 0.04
COL28A1-206ENST00000465339 MYCP01106 439 aaPredicted RBP15.33■□□□□ 0.04
COL28A1-206ENST00000465339 CYP21A2P08686 494 aa15.33■□□□□ 0.04
COL28A1-206ENST00000465339 CAPN2P17655 700 aa15.33■□□□□ 0.04
COL28A1-206ENST00000465339 GRB14Q14449 540 aa15.33■□□□□ 0.04
COL28A1-206ENST00000465339 MTFR1Q15390 333 aa15.33■□□□□ 0.04
COL28A1-206ENST00000465339 NKX2-3Q8TAU0 364 aa15.33■□□□□ 0.04
COL28A1-206ENST00000465339 ANKS1AQ92625 1134 aa15.33■□□□□ 0.04
COL28A1-206ENST00000465339 ZSCAN10Q96SZ4 725 aaPredicted RBP15.33■□□□□ 0.04
COL28A1-206ENST00000465339 APBA2Q99767 749 aa15.33■□□□□ 0.04
COL28A1-206ENST00000465339 RNF208Q9H0X6 261 aa15.33■□□□□ 0.04
COL28A1-206ENST00000465339 ISY1Q9ULR0 285 aaKnown RBP15.33■□□□□ 0.04
COL28A1-206ENST00000465339 ZNF236Q9UL36 1845 aa15.32■□□□□ 0.04
COL28A1-206ENST00000465339 GJB1P08034 283 aa15.32■□□□□ 0.04
COL28A1-206ENST00000465339 HOXC6P09630 235 aa15.32■□□□□ 0.04
COL28A1-206ENST00000465339 FCER1AP12319 257 aa15.32■□□□□ 0.04
COL28A1-206ENST00000465339 OAZ1P54368 228 aa15.32■□□□□ 0.04
COL28A1-206ENST00000465339 IKQ13123 557 aaPredicted RBP15.32■□□□□ 0.04
COL28A1-206ENST00000465339 KCTD1Q719H9 257 aa15.32■□□□□ 0.04
COL28A1-206ENST00000465339 TRIB2Q92519 343 aa15.32■□□□□ 0.04
COL28A1-206ENST00000465339 ZKSCAN3Q9BRR0 538 aa15.32■□□□□ 0.04
COL28A1-206ENST00000465339 TEX13BQ9BXU2 312 aa15.32■□□□□ 0.04
COL28A1-206ENST00000465339 SLC38A10Q9HBR0 1119 aa15.32■□□□□ 0.04
COL28A1-206ENST00000465339 SLC5A4Q9NY91 659 aa15.32■□□□□ 0.04
COL28A1-206ENST00000465339 CDC45O75419 566 aa15.31■□□□□ 0.04
COL28A1-206ENST00000465339 ZKSCAN1P17029 563 aaPredicted RBP15.31■□□□□ 0.04
COL28A1-206ENST00000465339 ADORA2AP29274 412 aa15.31■□□□□ 0.04
COL28A1-206ENST00000465339 SNRNP48Q6IEG0 339 aaKnown RBP15.31■□□□□ 0.04
COL28A1-206ENST00000465339 DPP9Q86TI2 863 aa15.31■□□□□ 0.04
COL28A1-206ENST00000465339 SPRYD3Q8NCJ5 442 aa15.31■□□□□ 0.04
COL28A1-206ENST00000465339 UBAC1Q9BSL1 405 aa15.31■□□□□ 0.04
COL28A1-206ENST00000465339 UNC93B1Q9H1C4 597 aa15.31■□□□□ 0.04
COL28A1-206ENST00000465339 MTMR7Q9Y216 660 aa15.31■□□□□ 0.04
COL28A1-206ENST00000465339 PCDHB13Q9Y5F0 798 aa15.31■□□□□ 0.04
COL28A1-206ENST00000465339 RBM8AQ9Y5S9 174 aaKnown RBP15.31■□□□□ 0.04
COL28A1-206ENST00000465339 E7EWF7 191 aa15.3■□□□□ 0.04
COL28A1-206ENST00000465339 EN2P19622 333 aaPredicted RBP15.3■□□□□ 0.04
COL28A1-206ENST00000465339 CCDC96Q2M329 555 aa15.3■□□□□ 0.04
COL28A1-206ENST00000465339 BTNL9Q6UXG8 535 aa15.3■□□□□ 0.04
COL28A1-206ENST00000465339 RPTORQ8N122 1335 aa15.3■□□□□ 0.04
COL28A1-206ENST00000465339 CPXCR1Q8N123 301 aa15.3■□□□□ 0.04
COL28A1-206ENST00000465339 NCOA7Q8NI08 942 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms