RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 VAT1LQ9HCJ6 419 aa12.77□□□□□ -0.37
SCN9A-205ENST00000454569 GINM1Q9NU53 330 aa12.77□□□□□ -0.37
SCN9A-205ENST00000454569 ORC3Q9UBD5 711 aaPredicted RBP12.77□□□□□ -0.37
SCN9A-205ENST00000454569 V9GY48 417 aaPredicted RBP12.77□□□□□ -0.37
SCN9A-205ENST00000454569 LOC285556D6RIA3 1793 aa12.76□□□□□ -0.37
SCN9A-205ENST00000454569 USP17L10C9JJH3 530 aa12.76□□□□□ -0.37
SCN9A-205ENST00000454569 IRF6O14896 467 aa12.76□□□□□ -0.37
SCN9A-205ENST00000454569 ADAMTS3O15072 1205 aa12.76□□□□□ -0.37
SCN9A-205ENST00000454569 FMNL1O95466 1100 aaPredicted RBP12.76□□□□□ -0.37
SCN9A-205ENST00000454569 YY1P25490 414 aa12.76□□□□□ -0.37
SCN9A-205ENST00000454569 SLC1A4P43007 532 aa12.76□□□□□ -0.37
SCN9A-205ENST00000454569 HMGCS2P54868 508 aa12.76□□□□□ -0.37
SCN9A-205ENST00000454569 BACE1P56817 501 aa12.76□□□□□ -0.37
SCN9A-205ENST00000454569 CCDC96Q2M329 555 aa12.76□□□□□ -0.37
SCN9A-205ENST00000454569 OTUD5Q96G74 571 aa12.76□□□□□ -0.37
SCN9A-205ENST00000454569 GMCL1Q96IK5 515 aa12.76□□□□□ -0.37
SCN9A-205ENST00000454569 MS4A4AQ96JQ5 239 aa12.76□□□□□ -0.37
SCN9A-205ENST00000454569 KIAA1683Q9H0B3 1180 aa12.76□□□□□ -0.37
SCN9A-205ENST00000454569 FBXO28Q9NVF7 368 aa12.76□□□□□ -0.37
SCN9A-205ENST00000454569 RBM28Q9NW13 759 aaKnown RBP12.76□□□□□ -0.37
SCN9A-205ENST00000454569 CSADQ9Y600 493 aa12.76□□□□□ -0.37
SCN9A-205ENST00000454569 MYH15Q9Y2K3 1946 aa12.76□□□□□ -0.37
SCN9A-205ENST00000454569 TMEM232C9JQI7 657 aa12.75□□□□□ -0.37
SCN9A-205ENST00000454569 TAL1P17542 331 aaPredicted RBP12.75□□□□□ -0.37
SCN9A-205ENST00000454569 SYT1P21579 422 aa12.75□□□□□ -0.37
SCN9A-205ENST00000454569 GUCY1B3Q02153 619 aa12.75□□□□□ -0.37
SCN9A-205ENST00000454569 FOXD4L5Q5VV16 416 aaPredicted RBP12.75□□□□□ -0.37
SCN9A-205ENST00000454569 ADGRF4Q8IZF3 695 aa12.75□□□□□ -0.37
SCN9A-205ENST00000454569 DCAF4Q8WV16 495 aa12.75□□□□□ -0.37
SCN9A-205ENST00000454569 FOXD4L4Q8WXT5 416 aaPredicted RBP12.75□□□□□ -0.37
SCN9A-205ENST00000454569 CHAMP1Q96JM3 812 aa12.75□□□□□ -0.37
SCN9A-205ENST00000454569 FEZ1Q99689 392 aa12.75□□□□□ -0.37
SCN9A-205ENST00000454569 RIOX1Q9H6W3 641 aa12.75□□□□□ -0.37
SCN9A-205ENST00000454569 CCDC196A0A1B0GTZ2 297 aa12.74□□□□□ -0.37
SCN9A-205ENST00000454569 SPDYE5A6NIY4 337 aa12.74□□□□□ -0.37
SCN9A-205ENST00000454569 PRPF3O43395 683 aaKnown RBP12.74□□□□□ -0.37
SCN9A-205ENST00000454569 DHX16O60231 1041 aaKnown RBP12.74□□□□□ -0.37
SCN9A-205ENST00000454569 BMP3P12645 472 aa12.74□□□□□ -0.37
SCN9A-205ENST00000454569 KIF5BP33176 963 aa12.74□□□□□ -0.37
SCN9A-205ENST00000454569 SSRP1Q08945 709 aaKnown RBP12.74□□□□□ -0.37
SCN9A-205ENST00000454569 ASPRV1Q53RT3 343 aa12.74□□□□□ -0.37
SCN9A-205ENST00000454569 PPP4R3BQ5MIZ7 849 aa12.74□□□□□ -0.37
SCN9A-205ENST00000454569 OPTNQ96CV9 577 aa12.74□□□□□ -0.37
SCN9A-205ENST00000454569 PIGSQ96S52 555 aa12.74□□□□□ -0.37
SCN9A-205ENST00000454569 JMJD4Q9H9V9 463 aa12.74□□□□□ -0.37
SCN9A-205ENST00000454569 ISY1Q9ULR0 285 aaKnown RBP12.74□□□□□ -0.37
SCN9A-205ENST00000454569 PPP1R11O60927 126 aaPredicted RBP12.73□□□□□ -0.37
SCN9A-205ENST00000454569 VCAM1P19320 739 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 MKRN3Q13064 507 aaKnown RBP12.73□□□□□ -0.37
SCN9A-205ENST00000454569 MOGSQ13724 837 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 PPP2R5BQ15173 497 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 LARP1BQ659C4 914 aaKnown RBP12.73□□□□□ -0.37
SCN9A-205ENST00000454569 TYW1BQ6NUM6 668 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 ERO1BQ86YB8 467 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 RNF26Q9BY78 433 aaPredicted RBP12.73□□□□□ -0.37
SCN9A-205ENST00000454569 AS3MTQ9HBK9 375 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 CWC22Q9HCG8 908 aaKnown RBP12.73□□□□□ -0.37
SCN9A-205ENST00000454569 GOPCQ9HD26 462 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 SYNPO2Q9UMS6 1093 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 PPATQ06203 517 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 TREML2Q5T2D2 321 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 POTEEQ6S8J3 1075 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 HOMER1Q86YM7 354 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 C2orf69Q8N8R5 385 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 GPKOWQ92917 476 aaPredicted RBP eCLIP12.73□□□□□ -0.37
SCN9A-205ENST00000454569 SLC10A4Q96EP9 437 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 WNK4Q96J92 1243 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 ALG1Q9BT22 464 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 SPZ1Q9BXG8 430 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 TRPC6Q9Y210 931 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 MTMR6Q9Y217 621 aa12.73□□□□□ -0.37
SCN9A-205ENST00000454569 STK36Q9NRP7 1315 aa12.72□□□□□ -0.37
SCN9A-205ENST00000454569 TOMM70O94826 608 aa12.72□□□□□ -0.37
SCN9A-205ENST00000454569 GNAQP50148 359 aa12.72□□□□□ -0.37
SCN9A-205ENST00000454569 HMGN5P82970 282 aaKnown RBP12.72□□□□□ -0.37
SCN9A-205ENST00000454569 SH3D19Q5HYK7 790 aa12.72□□□□□ -0.37
SCN9A-205ENST00000454569 GPATCH4Q5T3I0 446 aaKnown RBP12.72□□□□□ -0.37
SCN9A-205ENST00000454569 CPLX2Q6PUV4 134 aaKnown RBP12.72□□□□□ -0.37
SCN9A-205ENST00000454569 BTNL9Q6UXG8 535 aa12.72□□□□□ -0.37
SCN9A-205ENST00000454569 FAM184AQ8NB25 1140 aa12.72□□□□□ -0.37
SCN9A-205ENST00000454569 MTMR8Q96EF0 704 aa12.72□□□□□ -0.37
SCN9A-205ENST00000454569 RPAP3Q9H6T3 665 aaPredicted RBP12.72□□□□□ -0.37
SCN9A-205ENST00000454569 VPS54Q9P1Q0 977 aa12.72□□□□□ -0.37
SCN9A-205ENST00000454569 PRR12Q9ULL5 1215 aa12.72□□□□□ -0.37
SCN9A-205ENST00000454569 KCNJ14Q9UNX9 436 aa12.72□□□□□ -0.37
SCN9A-205ENST00000454569 KCNH4Q9UQ05 1017 aa12.72□□□□□ -0.37
SCN9A-205ENST00000454569 C19orf81C9J6K1 198 aa12.71□□□□□ -0.37
SCN9A-205ENST00000454569 STX6O43752 255 aa12.71□□□□□ -0.37
SCN9A-205ENST00000454569 PEX10O60683 326 aa12.71□□□□□ -0.37
SCN9A-205ENST00000454569 CDKL5O76039 1030 aa12.71□□□□□ -0.37
SCN9A-205ENST00000454569 DEXIO95424 95 aa12.71□□□□□ -0.37
SCN9A-205ENST00000454569 SMARCA1P28370 1054 aa12.71□□□□□ -0.37
SCN9A-205ENST00000454569 HUNKP57058 714 aa12.71□□□□□ -0.37
SCN9A-205ENST00000454569 FKBP1BP68106 108 aa12.71□□□□□ -0.37
SCN9A-205ENST00000454569 PPIL2Q13356 520 aa12.71□□□□□ -0.37
SCN9A-205ENST00000454569 PFKFB3Q16875 520 aaPredicted RBP12.71□□□□□ -0.37
SCN9A-205ENST00000454569 SYDE2Q5VT97 1194 aa12.71□□□□□ -0.37
SCN9A-205ENST00000454569 WWC2Q6AWC2 1192 aa12.71□□□□□ -0.37
SCN9A-205ENST00000454569 SAPCD2Q86UD0 394 aa12.71□□□□□ -0.37
SCN9A-205ENST00000454569 SMC1BQ8NDV3 1235 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms