RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 GLDCP23378 1020 aa6.33□□□□□ -1.4
USP40-209ENST00000452724 RPL10P27635 214 aaKnown RBP6.33□□□□□ -1.4
USP40-209ENST00000452724 NBPF9Q3BBW0 867 aa6.33□□□□□ -1.4
USP40-209ENST00000452724 WAPLQ7Z5K2 1190 aa6.33□□□□□ -1.4
USP40-209ENST00000452724 LRRC56Q8IYG6 542 aaPredicted RBP6.33□□□□□ -1.4
USP40-209ENST00000452724 KCNN1Q92952 543 aa6.33□□□□□ -1.4
USP40-209ENST00000452724 ANAPC16Q96DE5 110 aa6.33□□□□□ -1.4
USP40-209ENST00000452724 TCTN2Q96GX1 697 aa6.33□□□□□ -1.4
USP40-209ENST00000452724 INTS4Q96HW7 963 aaKnown RBP6.33□□□□□ -1.4
USP40-209ENST00000452724 TM9SF2Q99805 663 aa6.33□□□□□ -1.4
USP40-209ENST00000452724 YBX2Q9Y2T7 364 aaKnown RBP6.33□□□□□ -1.4
USP40-209ENST00000452724 TNFRSF10CO14798 259 aa6.32□□□□□ -1.4
USP40-209ENST00000452724 POLR2BP30876 1174 aaKnown RBP6.32□□□□□ -1.4
USP40-209ENST00000452724 PDE6BP35913 854 aa6.32□□□□□ -1.4
USP40-209ENST00000452724 SLC14A2Q15849 920 aa6.32□□□□□ -1.4
USP40-209ENST00000452724 FBLN7Q53RD9 439 aa6.32□□□□□ -1.4
USP40-209ENST00000452724 ATG14Q6ZNE5 492 aa6.32□□□□□ -1.4
USP40-209ENST00000452724 RUFY4Q6ZNE9 571 aa6.32□□□□□ -1.4
USP40-209ENST00000452724 TAB3Q8N5C8 712 aaPredicted RBP6.32□□□□□ -1.4
USP40-209ENST00000452724 LINC01599Q8WXQ3 324 aa6.32□□□□□ -1.4
USP40-209ENST00000452724 FOXP3Q9BZS1 431 aa6.32□□□□□ -1.4
USP40-209ENST00000452724 TANGO6Q9C0B7 1094 aa6.32□□□□□ -1.4
USP40-209ENST00000452724 MKRN2Q9H000 416 aaKnown RBP6.32□□□□□ -1.4
USP40-209ENST00000452724 SP110Q9HB58 689 aa6.32□□□□□ -1.4
USP40-209ENST00000452724 TCFL5Q9UL49 500 aa6.32□□□□□ -1.4
USP40-209ENST00000452724 MRVI1Q9Y6F6 885 aa6.32□□□□□ -1.4
USP40-209ENST00000452724 SIGLEC6O43699 453 aa6.31□□□□□ -1.4
USP40-209ENST00000452724 MED14OSP0DP75 135 aa6.31□□□□□ -1.4
USP40-209ENST00000452724 ACRP10323 421 aa6.31□□□□□ -1.4
USP40-209ENST00000452724 GUCY2CP25092 1073 aa6.31□□□□□ -1.4
USP40-209ENST00000452724 CFPP27918 469 aa6.31□□□□□ -1.4
USP40-209ENST00000452724 KIR2DL1P43626 348 aaPredicted RBP6.31□□□□□ -1.4
USP40-209ENST00000452724 KIR2DL2P43627 348 aaPredicted RBP6.31□□□□□ -1.4
USP40-209ENST00000452724 INTS3Q68E01 1043 aaKnown RBP6.31□□□□□ -1.4
USP40-209ENST00000452724 CIAPIN1Q6FI81 312 aa6.31□□□□□ -1.4
USP40-209ENST00000452724 SPOCD1Q6ZMY3 1216 aa6.31□□□□□ -1.4
USP40-209ENST00000452724 SIAH1Q8IUQ4 282 aa6.31□□□□□ -1.4
USP40-209ENST00000452724 USHBP1Q8N6Y0 703 aa6.31□□□□□ -1.4
USP40-209ENST00000452724 LINC00116Q8NCU8 138 aa6.31□□□□□ -1.4
USP40-209ENST00000452724 SLC9A7Q96T83 725 aa6.31□□□□□ -1.4
USP40-209ENST00000452724 NPIPB6E9PJ23 425 aa6.3□□□□□ -1.4
USP40-209ENST00000452724 ETV2O00321 342 aaPredicted RBP6.3□□□□□ -1.4
USP40-209ENST00000452724 PEX10O60683 326 aa6.3□□□□□ -1.4
USP40-209ENST00000452724 PRAMEF1O95521 474 aa6.3□□□□□ -1.4
USP40-209ENST00000452724 SYPP08247 313 aa6.3□□□□□ -1.4
USP40-209ENST00000452724 SF3A1Q15459 793 aaKnown RBP6.3□□□□□ -1.4
USP40-209ENST00000452724 KCNA10Q16322 511 aa6.3□□□□□ -1.4
USP40-209ENST00000452724 TIGD5Q53EQ6 642 aa6.3□□□□□ -1.4
USP40-209ENST00000452724 TMEM132EQ6IEE7 984 aa6.3□□□□□ -1.4
USP40-209ENST00000452724 TMC3Q7Z5M5 1100 aa6.3□□□□□ -1.4
USP40-209ENST00000452724 ZNF605Q86T29 641 aa6.3□□□□□ -1.4
USP40-209ENST00000452724 FAM169BQ8N8A8 192 aa6.3□□□□□ -1.4
USP40-209ENST00000452724 C19orf47Q8N9M1 422 aaKnown RBP6.3□□□□□ -1.4
USP40-209ENST00000452724 MAP6Q96JE9 813 aa6.3□□□□□ -1.4
USP40-209ENST00000452724 DHRS1Q96LJ7 313 aa6.3□□□□□ -1.4
USP40-209ENST00000452724 FBXL21Q9UKT6 434 aa6.3□□□□□ -1.4
USP40-209ENST00000452724 ZNF281Q9Y2X9 895 aa6.3□□□□□ -1.4
USP40-209ENST00000452724 PCDHB12Q9Y5F1 795 aa6.3□□□□□ -1.4
USP40-209ENST00000452724 FAM86C2PA6NEL3 165 aa6.29□□□□□ -1.4
USP40-209ENST00000452724 SEMA7AO75326 666 aa6.29□□□□□ -1.4
USP40-209ENST00000452724 ATP2B1P20020 1258 aa6.29□□□□□ -1.4
USP40-209ENST00000452724 ETFBP38117 255 aa6.29□□□□□ -1.4
USP40-209ENST00000452724 CILP2Q8IUL8 1156 aa6.29□□□□□ -1.4
USP40-209ENST00000452724 SREK1Q8WXA9 508 aaKnown RBP6.29□□□□□ -1.4
USP40-209ENST00000452724 ZNF512BQ96KM6 892 aaPredicted RBP6.29□□□□□ -1.4
USP40-209ENST00000452724 SLC6A18Q96N87 628 aa6.29□□□□□ -1.4
USP40-209ENST00000452724 PRDM14Q9GZV8 571 aa6.29□□□□□ -1.4
USP40-209ENST00000452724 ZNF408Q9H9D4 720 aa6.29□□□□□ -1.4
USP40-209ENST00000452724 CD320Q9NPF0 282 aa6.29□□□□□ -1.4
USP40-209ENST00000452724 CHST7Q9NS84 486 aa6.29□□□□□ -1.4
USP40-209ENST00000452724 OR14I1A6ND48 311 aa6.28□□□□□ -1.4
USP40-209ENST00000452724 SMAD7O15105 426 aaKnown RBP6.28□□□□□ -1.4
USP40-209ENST00000452724 PSPNO60542 156 aa6.28□□□□□ -1.4
USP40-209ENST00000452724 FKTNO75072 461 aa6.28□□□□□ -1.4
USP40-209ENST00000452724 USP2O75604 605 aaPredicted RBP6.28□□□□□ -1.4
USP40-209ENST00000452724 KRT1P04264 644 aa6.28□□□□□ -1.4
USP40-209ENST00000452724 ZSCAN22P10073 491 aaPredicted RBP6.28□□□□□ -1.4
USP40-209ENST00000452724 SNW1Q13573 536 aaKnown RBP6.28□□□□□ -1.4
USP40-209ENST00000452724 ZYXQ15942 572 aaKnown RBP6.28□□□□□ -1.4
USP40-209ENST00000452724 PPP2R5EQ16537 467 aa6.28□□□□□ -1.4
USP40-209ENST00000452724 TNNI3KQ59H18 835 aa6.28□□□□□ -1.4
USP40-209ENST00000452724 UNC5AQ6ZN44 842 aa6.28□□□□□ -1.4
USP40-209ENST00000452724 CEP128Q6ZU80 1094 aa6.28□□□□□ -1.4
USP40-209ENST00000452724 TMEM192Q8IY95 271 aa6.28□□□□□ -1.4
USP40-209ENST00000452724 G6PC3Q9BUM1 346 aa6.28□□□□□ -1.4
USP40-209ENST00000452724 ZNF552Q9H707 407 aaPredicted RBP6.28□□□□□ -1.4
USP40-209ENST00000452724 KCNK12Q9HB15 430 aa6.28□□□□□ -1.4
USP40-209ENST00000452724 CRTAC1Q9NQ79 661 aa6.28□□□□□ -1.4
USP40-209ENST00000452724 PRR13Q9NZ81 148 aa6.28□□□□□ -1.4
USP40-209ENST00000452724 PRKAG3Q9UGI9 489 aa6.28□□□□□ -1.4
USP40-209ENST00000452724 SMG5Q9UPR3 1016 aaKnown RBP6.28□□□□□ -1.4
USP40-209ENST00000452724 ARID1BQ8NFD5 2236 aaPredicted RBP6.27□□□□□ -1.4
USP40-209ENST00000452724 A0A1W2PQH9 124 aa6.27□□□□□ -1.41
USP40-209ENST00000452724 NRDCO43847 1150 aa6.27□□□□□ -1.41
USP40-209ENST00000452724 CASP7P55210 303 aa6.27□□□□□ -1.41
USP40-209ENST00000452724 OLFML2BQ68BL8 750 aa6.27□□□□□ -1.41
USP40-209ENST00000452724 C1QL4Q86Z23 238 aa6.27□□□□□ -1.41
USP40-209ENST00000452724 FCRL2Q96LA5 508 aaPredicted RBP6.27□□□□□ -1.41
USP40-209ENST00000452724 DSCC1Q9BVC3 393 aa6.27□□□□□ -1.41
USP40-209ENST00000452724 MCOLN1Q9GZU1 580 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms