RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 MMP14P50281 582 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 CAP1Q01518 475 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 GRAPQ13588 217 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 PRKG1Q13976 671 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 TAF1CQ15572 869 aaPredicted RBP6.13□□□□□ -1.43
PTPN4-206ENST00000441089 GRIK5Q16478 980 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 CCDC27Q2M243 656 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 SLC10A5Q5PT55 438 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 SUSD4Q5VX71 490 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 PSAPL1Q6NUJ1 521 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 KIF6Q6ZMV9 814 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 APOBEC3FQ8IUX4 373 aaKnown RBP6.13□□□□□ -1.43
PTPN4-206ENST00000441089 OGFOD1Q8N543 542 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 GRAPLQ8TC17 118 aaPredicted RBP6.13□□□□□ -1.43
PTPN4-206ENST00000441089 U2AF1L4Q8WU68 220 aaKnown RBP6.13□□□□□ -1.43
PTPN4-206ENST00000441089 WFDC12Q8WWY7 111 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 UBE2OQ9C0C9 1292 aaKnown RBP6.13□□□□□ -1.43
PTPN4-206ENST00000441089 ZC3H12CQ9C0D7 883 aaKnown RBP6.13□□□□□ -1.43
PTPN4-206ENST00000441089 KCNQ5Q9NR82 932 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 KCNH4Q9UQ05 1017 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 MAP3K15Q6ZN16 1313 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 FAM205AQ6ZU69 1335 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 MAPK8IP3Q9UPT6 1336 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 COL1A1P02452 1464 aaPredicted RBP6.13□□□□□ -1.43
PTPN4-206ENST00000441089 ZSWIM8A7E2V4 1837 aa6.13□□□□□ -1.43
PTPN4-206ENST00000441089 SSC5DA1L4H1 1573 aa6.12□□□□□ -1.43
PTPN4-206ENST00000441089 SERTM1A2A2V5 107 aa6.12□□□□□ -1.43
PTPN4-206ENST00000441089 MED26O95402 600 aa6.12□□□□□ -1.43
PTPN4-206ENST00000441089 GRNP28799 593 aaKnown RBP6.12□□□□□ -1.43
PTPN4-206ENST00000441089 RIPK4P57078 832 aa6.12□□□□□ -1.43
PTPN4-206ENST00000441089 RAC1P63000 192 aa6.12□□□□□ -1.43
PTPN4-206ENST00000441089 LACTBP83111 547 aaPredicted RBP6.12□□□□□ -1.43
PTPN4-206ENST00000441089 MAP3K11Q16584 847 aa6.12□□□□□ -1.43
PTPN4-206ENST00000441089 ECM29Q5VYK3 1845 aa6.12□□□□□ -1.43
PTPN4-206ENST00000441089 UBN2Q6ZU65 1347 aa6.12□□□□□ -1.43
PTPN4-206ENST00000441089 TRIM50Q86XT4 487 aa6.12□□□□□ -1.43
PTPN4-206ENST00000441089 IL17REQ8NFR9 667 aa6.12□□□□□ -1.43
PTPN4-206ENST00000441089 SUSD3Q96L08 255 aa6.12□□□□□ -1.43
PTPN4-206ENST00000441089 UCN2Q96RP3 112 aa6.12□□□□□ -1.43
PTPN4-206ENST00000441089 THUMPD2Q9BTF0 503 aaKnown RBP6.12□□□□□ -1.43
PTPN4-206ENST00000441089 C1QTNF1Q9BXJ1 281 aa6.12□□□□□ -1.43
PTPN4-206ENST00000441089 TSPAN10Q9H1Z9 355 aaPredicted RBP6.12□□□□□ -1.43
PTPN4-206ENST00000441089 PNNQ9H307 717 aaKnown RBP6.12□□□□□ -1.43
PTPN4-206ENST00000441089 DNAJB12Q9NXW2 375 aaKnown RBP6.12□□□□□ -1.43
PTPN4-206ENST00000441089 BIN2Q9UBW5 565 aaPredicted RBP6.12□□□□□ -1.43
PTPN4-206ENST00000441089 PKD1L2Q7Z442 2459 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 MGAMO43451 1857 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 USP17L3A6NCW0 530 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 USP17L4A6NCW7 530 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 SGPL1O95470 568 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 CENPBP07199 599 aaPredicted RBP6.11□□□□□ -1.43
PTPN4-206ENST00000441089 MAGEA10P43363 369 aaPredicted RBP6.11□□□□□ -1.43
PTPN4-206ENST00000441089 SLFN5Q08AF3 891 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 DCTN1Q14203 1278 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 NBPF9Q3BBW0 867 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 HDGFL1Q5TGJ6 251 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 DUSP27Q5VZP5 1158 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 USP17L2Q6R6M4 530 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 USP17L1Q7RTZ2 530 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 NECAB2Q7Z6G3 386 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 ZNF34Q8IZ26 560 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 TRMT2AQ8IZ69 625 aaKnown RBP6.11□□□□□ -1.43
PTPN4-206ENST00000441089 DEPDC4Q8N2C3 294 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 NGEFQ8N5V2 710 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 GAS2L2Q8NHY3 880 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 RAET1EQ8TD07 263 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 GMLQ99445 158 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 CDX2Q99626 313 aaPredicted RBP6.11□□□□□ -1.43
PTPN4-206ENST00000441089 PTPN18Q99952 460 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 UTP14AQ9BVJ6 771 aaKnown RBP6.11□□□□□ -1.43
PTPN4-206ENST00000441089 PHACTR1Q9C0D0 580 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 SCAF8Q9UPN6 1271 aaKnown RBP6.11□□□□□ -1.43
PTPN4-206ENST00000441089 RIPOR2Q9Y4F9 1068 aa6.11□□□□□ -1.43
PTPN4-206ENST00000441089 GPC6Q9Y625 555 aaPredicted RBP6.11□□□□□ -1.43
PTPN4-206ENST00000441089 CEMIPQ8WUJ3 1361 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 DOCK3Q8IZD9 2030 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 CHD8Q9HCK8 2581 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 WNT10BO00744 389 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 ATP9BO43861 1147 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 TLR2O60603 784 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 TFRCP02786 760 aaKnown RBP6.1□□□□□ -1.43
PTPN4-206ENST00000441089 SSTR4P31391 388 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 ATP1A2P50993 1020 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 MCM10Q7L590 875 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 WDR63Q8IWG1 891 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 ANKRD13AQ8IZ07 590 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 C7orf61Q8IZ16 206 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 CLUAP1Q96AJ1 413 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 CLMNQ96JQ2 1002 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 FAM161BQ96MY7 647 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 NEUROD4Q9HD90 331 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 ZCCHC17Q9NP64 241 aaKnown RBP6.1□□□□□ -1.43
PTPN4-206ENST00000441089 POLLQ9UGP5 575 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 SRRDQ9UH36 339 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 ZMYND8Q9ULU4 1186 aaPredicted RBP6.1□□□□□ -1.43
PTPN4-206ENST00000441089 ARID1BQ8NFD5 2236 aaPredicted RBP6.1□□□□□ -1.43
PTPN4-206ENST00000441089 CFAP54Q96N23 3096 aa6.1□□□□□ -1.43
PTPN4-206ENST00000441089 OTOFQ9HC10 1997 aa6.09□□□□□ -1.43
PTPN4-206ENST00000441089 MYO3BQ8WXR4 1341 aa6.09□□□□□ -1.43
PTPN4-206ENST00000441089 KCNQ3O43525 872 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms