RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 TLL2Q9Y6L7 1015 aa23.97■■□□□ 1.43
CHD3-204ENST00000439235 V9GY48 417 aaPredicted RBP23.97■■□□□ 1.43
CHD3-204ENST00000439235 DTNBO60941 627 aa23.96■■□□□ 1.43
CHD3-204ENST00000439235 PDIA4P13667 645 aaKnown RBP23.96■■□□□ 1.43
CHD3-204ENST00000439235 SLC16A2P36021 539 aa23.96■■□□□ 1.43
CHD3-204ENST00000439235 GJA5P36382 358 aa23.96■■□□□ 1.43
CHD3-204ENST00000439235 DGKZQ13574 1117 aa23.96■■□□□ 1.43
CHD3-204ENST00000439235 SLC35G1Q2M3R5 365 aa23.96■■□□□ 1.43
CHD3-204ENST00000439235 FASTKD5Q7L8L6 764 aaKnown RBP23.96■■□□□ 1.43
CHD3-204ENST00000439235 ADGRF4Q8IZF3 695 aa23.96■■□□□ 1.43
CHD3-204ENST00000439235 ALG1Q9BT22 464 aa23.96■■□□□ 1.43
CHD3-204ENST00000439235 CPVLQ9H3G5 476 aa23.96■■□□□ 1.43
CHD3-204ENST00000439235 CIZ1Q9ULV3 898 aaPredicted RBP23.96■■□□□ 1.43
CHD3-204ENST00000439235 SPRYD7Q5W111 196 aa23.95■■□□□ 1.42
CHD3-204ENST00000439235 GADL1Q6ZQY3 521 aa23.95■■□□□ 1.42
CHD3-204ENST00000439235 VAT1LQ9HCJ6 419 aa23.95■■□□□ 1.42
CHD3-204ENST00000439235 ABT1Q9ULW3 272 aaKnown RBP23.95■■□□□ 1.42
CHD3-204ENST00000439235 LOC285556D6RIA3 1793 aa23.95■■□□□ 1.42
CHD3-204ENST00000439235 SCG2P13521 617 aa23.94■■□□□ 1.42
CHD3-204ENST00000439235 DDIT3P35638 169 aa23.94■■□□□ 1.42
CHD3-204ENST00000439235 GTF2A2P52657 109 aa23.94■■□□□ 1.42
CHD3-204ENST00000439235 LARP1BQ659C4 914 aaKnown RBP23.94■■□□□ 1.42
CHD3-204ENST00000439235 RGMBQ6NW40 437 aa23.94■■□□□ 1.42
CHD3-204ENST00000439235 SLF1Q9BQI6 1058 aa23.94■■□□□ 1.42
CHD3-204ENST00000439235 JMJD4Q9H9V9 463 aa23.94■■□□□ 1.42
CHD3-204ENST00000439235 PRR12Q9ULL5 1215 aa23.94■■□□□ 1.42
CHD3-204ENST00000439235 USP17L15C9J2P7 530 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 USP17L13C9JLJ4 530 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 USP17L11C9JVI0 530 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 USP17L18D6R9N7 530 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 USP17L22D6RA61 530 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 USP17L17D6RBQ6 530 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 USP17L19D6RCP7 530 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 USP17L20D6RJB6 530 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 FLOT1O75955 427 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 XBP1P17861 261 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 ZNF157P51786 506 aaPredicted RBP23.93■■□□□ 1.42
CHD3-204ENST00000439235 USP17L24Q0WX57 530 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 TRIM29Q14134 588 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 PFKFB3Q16875 520 aaPredicted RBP23.93■■□□□ 1.42
CHD3-204ENST00000439235 HOMER1Q86YM7 354 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 RASAL3Q86YV0 1011 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 RGS22Q8NE09 1264 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 PIBF1Q8WXW3 757 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 MTMR8Q96EF0 704 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 HHIPL1Q96JK4 782 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 C8orf76Q96K31 380 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 PIGSQ96S52 555 aa23.93■■□□□ 1.42
CHD3-204ENST00000439235 hCG_1642624A0A1W2PR95 340 aa23.92■■□□□ 1.42
CHD3-204ENST00000439235 hCG_1984214I3L0E3 225 aa23.92■■□□□ 1.42
CHD3-204ENST00000439235 CETPP11597 493 aa23.92■■□□□ 1.42
CHD3-204ENST00000439235 PABPC4Q13310 644 aaKnown RBP eCLIP23.92■■□□□ 1.426e-10■■□□□ 11.4
CHD3-204ENST00000439235 PKN1Q16512 942 aa23.92■■□□□ 1.42
CHD3-204ENST00000439235 ZNF713Q8N859 430 aaPredicted RBP23.92■■□□□ 1.42
CHD3-204ENST00000439235 PRPF38AQ8NAV1 312 aaKnown RBP23.92■■□□□ 1.42
CHD3-204ENST00000439235 KIFC2Q96AC6 838 aa23.92■■□□□ 1.42
CHD3-204ENST00000439235 AGTPBP1Q9UPW5 1226 aa23.92■■□□□ 1.42
CHD3-204ENST00000439235 MYPNQ86TC9 1320 aa23.91■■□□□ 1.42
CHD3-204ENST00000439235 PTPRFP10586 1907 aa23.91■■□□□ 1.42
CHD3-204ENST00000439235 PNMA6FA0A0J9YX94 578 aa23.91■■□□□ 1.42
CHD3-204ENST00000439235 ZBTB5O15062 677 aa23.91■■□□□ 1.42
CHD3-204ENST00000439235 SYT1P21579 422 aa23.91■■□□□ 1.42
CHD3-204ENST00000439235 CDC37Q16543 378 aaPredicted RBP23.91■■□□□ 1.42
CHD3-204ENST00000439235 CATSPERGQ6ZRH7 1159 aa23.91■■□□□ 1.42
CHD3-204ENST00000439235 DNAJC5GQ8N7S2 189 aa23.91■■□□□ 1.42
CHD3-204ENST00000439235 FBXO28Q9NVF7 368 aa23.91■■□□□ 1.42
CHD3-204ENST00000439235 CHMP5Q9NZZ3 219 aa23.91■■□□□ 1.42
CHD3-204ENST00000439235 PPP1R9AQ9ULJ8 1098 aa23.91■■□□□ 1.42
CHD3-204ENST00000439235 H3BQV1 296 aa23.9■■□□□ 1.42
CHD3-204ENST00000439235 STX6O43752 255 aa23.9■■□□□ 1.42
CHD3-204ENST00000439235 FDX1P10109 184 aa23.9■■□□□ 1.42
CHD3-204ENST00000439235 NUCB2P80303 420 aa23.9■■□□□ 1.42
CHD3-204ENST00000439235 TRAF1Q13077 416 aa23.9■■□□□ 1.42
CHD3-204ENST00000439235 FAM177A1Q8N128 213 aaPredicted RBP23.9■■□□□ 1.42
CHD3-204ENST00000439235 SLC10A3P09131 477 aa23.89■■□□□ 1.41
CHD3-204ENST00000439235 HOXA7P31268 230 aaPredicted RBP23.89■■□□□ 1.41
CHD3-204ENST00000439235 FOSBP53539 338 aa23.89■■□□□ 1.41
CHD3-204ENST00000439235 MKRN3Q13064 507 aaKnown RBP23.89■■□□□ 1.41
CHD3-204ENST00000439235 COG2Q14746 738 aa23.89■■□□□ 1.41
CHD3-204ENST00000439235 QRICH1Q2TAL8 776 aa23.89■■□□□ 1.41
CHD3-204ENST00000439235 TREML2Q5T2D2 321 aa23.89■■□□□ 1.41
CHD3-204ENST00000439235 SAMD1Q6SPF0 538 aaPredicted RBP23.89■■□□□ 1.41
CHD3-204ENST00000439235 HEATR3Q7Z4Q2 680 aa23.89■■□□□ 1.41
CHD3-204ENST00000439235 CCDC102AQ96A19 550 aa23.89■■□□□ 1.41
CHD3-204ENST00000439235 AIFM3Q96NN9 605 aa23.89■■□□□ 1.41
CHD3-204ENST00000439235 RANBP17Q9H2T7 1088 aaKnown RBP23.89■■□□□ 1.41
CHD3-204ENST00000439235 SH3GLB2Q9NR46 395 aa23.89■■□□□ 1.41
CHD3-204ENST00000439235 WDR33Q9C0J8 1336 aaKnown RBP23.88■■□□□ 1.41
CHD3-204ENST00000439235 CCL15-CCL14A0A0B4J2E2 113 aa23.88■■□□□ 1.41
CHD3-204ENST00000439235 VPS37CA5D8V6 355 aaPredicted RBP23.88■■□□□ 1.41
CHD3-204ENST00000439235 IRX3P78415 501 aaPredicted RBP23.88■■□□□ 1.41
CHD3-204ENST00000439235 MOGSQ13724 837 aa23.88■■□□□ 1.41
CHD3-204ENST00000439235 CCL15Q16663 113 aa23.88■■□□□ 1.41
CHD3-204ENST00000439235 CCDC148Q8NFR7 591 aa23.88■■□□□ 1.41
CHD3-204ENST00000439235 CCDC12Q8WUD4 166 aaPredicted RBP23.88■■□□□ 1.41
CHD3-204ENST00000439235 MS4A4AQ96JQ5 239 aa23.88■■□□□ 1.41
CHD3-204ENST00000439235 BARHL2Q9NY43 387 aa23.88■■□□□ 1.41
CHD3-204ENST00000439235 CTDP1Q9Y5B0 961 aaPredicted RBP23.88■■□□□ 1.41
CHD3-204ENST00000439235 MANSC4A6NHS7 340 aaPredicted RBP23.87■■□□□ 1.41
CHD3-204ENST00000439235 ZBED4O75132 1171 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms