RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 ZNF34Q8IZ26 560 aa13.71□□□□□ -0.22
TCOF1-205ENST00000439160 STAG1Q8WVM7 1258 aa13.71□□□□□ -0.22
TCOF1-205ENST00000439160 CPVLQ9H3G5 476 aa13.71□□□□□ -0.22
TCOF1-205ENST00000439160 KANSL2Q9H9L4 492 aa13.71□□□□□ -0.22
TCOF1-205ENST00000439160 DEPDC5O75140 1603 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 GSG1L2A8MUP6 293 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 ARHGAP6O43182 974 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 ASPRV1Q53RT3 343 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 STOX1Q6ZVD7 989 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 CEP112Q8N8E3 955 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 RDH13Q8NBN7 331 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 DCP1AQ9NPI6 582 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-205ENST00000439160 PPLO60437 1756 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 POLR1AO95602 1720 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-205ENST00000439160 JCADQ9P266 1359 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 EXOC3O60645 756 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 CAMTA2O94983 1202 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 ADRA2BP18089 450 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 IRX3P78415 501 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-205ENST00000439160 TRIM14Q14142 442 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 EAPPQ56P03 285 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-205ENST00000439160 CTR9Q6PD62 1173 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 MAATS1Q7Z4T9 603 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 MB21D2Q8IYB1 491 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-205ENST00000439160 FNBP1Q96RU3 617 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 TAOK3Q9H2K8 898 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 CYP26C1Q6V0L0 522 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 TICAM2Q86XR7 235 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 DYDC1Q8WWB3 177 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 GOLGA1Q92805 767 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 SLC39A2Q9NP94 309 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 NLRC4Q9NPP4 1024 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 GOLGA6L10A0A0M3HER8 536 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 GCOM1H8Y6P7 765 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-205ENST00000439160 NOP56O00567 594 aaKnown RBP13.7□□□□□ -0.22
TCOF1-205ENST00000439160 PRPF3O43395 683 aaKnown RBP13.7□□□□□ -0.22
TCOF1-205ENST00000439160 POLR2MP0CAP2 368 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 UBXN2AP68543 259 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 MIGA2Q7L4E1 593 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 TBCKQ8TEA7 893 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 SLF1Q9BQI6 1058 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 SELENOOQ9BVL4 669 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 PLA2G12BQ9BX93 195 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 PCDHB13Q9Y5F0 798 aa13.7□□□□□ -0.22
TCOF1-205ENST00000439160 GTPBP6O43824 516 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-205ENST00000439160 LONP1P36776 959 aaKnown RBP13.69□□□□□ -0.22
TCOF1-205ENST00000439160 C11orf57Q6ZUT1 292 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-205ENST00000439160 SMYD4Q8IYR2 804 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-205ENST00000439160 PAGR1Q9BTK6 254 aa13.69□□□□□ -0.22
TCOF1-205ENST00000439160 PI4KBQ9UBF8 816 aa13.69□□□□□ -0.22
TCOF1-205ENST00000439160 CSF1RP07333 972 aa13.69□□□□□ -0.22
TCOF1-205ENST00000439160 VPS72Q15906 364 aa13.69□□□□□ -0.22
TCOF1-205ENST00000439160 PLVAPQ9BX97 442 aa13.69□□□□□ -0.22
TCOF1-205ENST00000439160 ZDHHC9Q9Y397 364 aa13.69□□□□□ -0.22
TCOF1-205ENST00000439160 MRPL11Q9Y3B7 192 aaKnown RBP13.69□□□□□ -0.22
TCOF1-205ENST00000439160 CALUO43852 315 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-205ENST00000439160 RFX5P48382 616 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-205ENST00000439160 TRAPPC10P48553 1259 aa13.69□□□□□ -0.22
TCOF1-205ENST00000439160 NLRX1Q86UT6 975 aa13.69□□□□□ -0.22
TCOF1-205ENST00000439160 IFT74Q96LB3 600 aa13.69□□□□□ -0.22
TCOF1-205ENST00000439160 CSADQ9Y600 493 aa13.69□□□□□ -0.22
TCOF1-205ENST00000439160 IVNS1ABPQ9Y6Y0 642 aa13.69□□□□□ -0.22
TCOF1-205ENST00000439160 FAM196BA6NMK8 535 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 CCDC93Q567U6 631 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 DCAF15Q66K64 600 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 DGKHQ86XP1 1220 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 ENAHQ8N8S7 591 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-205ENST00000439160 USP32Q8NFA0 1604 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 FAM170AA1A519 330 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 KCNJ18B7U540 433 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 SORBS3O60504 671 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 RPN1P04843 607 aaKnown RBP13.68□□□□□ -0.22
TCOF1-205ENST00000439160 EEF2P13639 858 aaKnown RBP13.68□□□□□ -0.22
TCOF1-205ENST00000439160 GBP2P32456 591 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-205ENST00000439160 MORC3Q14149 939 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 KCNJ12Q14500 433 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 PTPN21Q16825 1174 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 HOOK3Q86VS8 718 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 TTLL6Q8N841 843 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 TRIML1Q8N9V2 468 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 LINC00116Q8NCU8 138 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 LMBR1Q8WVP7 490 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 KAZALD1Q96I82 304 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 RIMS1Q86UR5 1692 aaKnown RBP13.68□□□□□ -0.22
TCOF1-205ENST00000439160 RIOK3O14730 519 aaKnown RBP13.68□□□□□ -0.22
TCOF1-205ENST00000439160 TMTC1Q8IUR5 882 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 MYOCDQ8IZQ8 938 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 DHX36Q9H2U1 1008 aaKnown RBP13.68□□□□□ -0.22
TCOF1-205ENST00000439160 CCPG1Q9ULG6 757 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 GTF2F1P35269 517 aaKnown RBP eCLIP13.68□□□□□ -0.22
TCOF1-205ENST00000439160 MIER3Q7Z3K6 550 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 CCDC84Q86UT8 332 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-205ENST00000439160 PLA2G4DQ86XP0 818 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 NRBP1Q9UHY1 535 aa13.68□□□□□ -0.22
TCOF1-205ENST00000439160 USP42Q9H9J4 1324 aaKnown RBP13.67□□□□□ -0.22
TCOF1-205ENST00000439160 CDC27P30260 824 aa13.67□□□□□ -0.22
TCOF1-205ENST00000439160 NKX1-1Q15270 411 aaPredicted RBP13.67□□□□□ -0.22
TCOF1-205ENST00000439160 EPSTI1Q96J88 318 aa13.67□□□□□ -0.22
TCOF1-205ENST00000439160 MAP2P11137 1827 aaKnown RBP13.67□□□□□ -0.22
TCOF1-205ENST00000439160 KDM3AQ9Y4C1 1321 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms