RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 EGR3Q06889 387 aa4.01□□□□□ -1.77
VPS41-206ENST00000418457 PPP2R5DQ14738 602 aa4.01□□□□□ -1.77
VPS41-206ENST00000418457 SV2CQ496J9 727 aa4.01□□□□□ -1.77
VPS41-206ENST00000418457 CWF19L1Q69YN2 538 aaKnown RBP4.01□□□□□ -1.77
VPS41-206ENST00000418457 TP53INP2Q8IXH6 220 aa4.01□□□□□ -1.77
VPS41-206ENST00000418457 CRACR2BQ8N4Y2 399 aaPredicted RBP4.01□□□□□ -1.77
VPS41-206ENST00000418457 FIBCD1Q8N539 461 aa4.01□□□□□ -1.77
VPS41-206ENST00000418457 AGBL5Q8NDL9 886 aa4.01□□□□□ -1.77
VPS41-206ENST00000418457 MKL1Q969V6 931 aa4.01□□□□□ -1.77
VPS41-206ENST00000418457 DEPDC7Q96QD5 511 aa4.01□□□□□ -1.77
VPS41-206ENST00000418457 CCDC113Q9H0I3 377 aa4.01□□□□□ -1.77
VPS41-206ENST00000418457 NOL6Q9H6R4 1146 aaKnown RBP4.01□□□□□ -1.77
VPS41-206ENST00000418457 CARS2Q9HA77 564 aaKnown RBP4.01□□□□□ -1.77
VPS41-206ENST00000418457 ZFP64Q9NPA5 681 aa4.01□□□□□ -1.77
VPS41-206ENST00000418457 PAK6Q9NQU5 681 aaPredicted RBP4.01□□□□□ -1.77
VPS41-206ENST00000418457 LMCD1Q9NZU5 365 aa4.01□□□□□ -1.77
VPS41-206ENST00000418457 LRP2BPQ9P2M1 347 aa4.01□□□□□ -1.77
VPS41-206ENST00000418457 APEX2Q9UBZ4 518 aa4.01□□□□□ -1.77
VPS41-206ENST00000418457 DIS3Q9Y2L1 958 aaKnown RBP4.01□□□□□ -1.77
VPS41-206ENST00000418457 SF3B6Q9Y3B4 125 aaKnown RBP4.01□□□□□ -1.77
VPS41-206ENST00000418457 PCDHA11Q9Y5I1 949 aa4.01□□□□□ -1.77
VPS41-206ENST00000418457 AGRPO00253 132 aa4□□□□□ -1.77
VPS41-206ENST00000418457 NOP56O00567 594 aaKnown RBP4□□□□□ -1.77
VPS41-206ENST00000418457 SYPP08247 313 aa4□□□□□ -1.77
VPS41-206ENST00000418457 FUT4P22083 530 aa4□□□□□ -1.77
VPS41-206ENST00000418457 BMP8BP34820 402 aa4□□□□□ -1.77
VPS41-206ENST00000418457 CTSKP43235 329 aa4□□□□□ -1.77
VPS41-206ENST00000418457 POU4F1Q01851 419 aa4□□□□□ -1.77
VPS41-206ENST00000418457 IFRD2Q12894 506 aaPredicted RBP4□□□□□ -1.77
VPS41-206ENST00000418457 RASGRF1Q13972 1273 aa4□□□□□ -1.77
VPS41-206ENST00000418457 RASA3Q14644 834 aa4□□□□□ -1.77
VPS41-206ENST00000418457 NFE2L2Q16236 605 aa4□□□□□ -1.77
VPS41-206ENST00000418457 SLC10A6Q3KNW5 377 aa4□□□□□ -1.77
VPS41-206ENST00000418457 CCDC144BQ3MJ40 725 aa4□□□□□ -1.77
VPS41-206ENST00000418457 POMZP3Q6PJE2 187 aa4□□□□□ -1.77
VPS41-206ENST00000418457 CRTC3Q6UUV7 619 aa4□□□□□ -1.77
VPS41-206ENST00000418457 RNF111Q6ZNA4 994 aa4□□□□□ -1.77
VPS41-206ENST00000418457 NFXL1Q6ZNB6 911 aa4□□□□□ -1.77
VPS41-206ENST00000418457 DPH6Q7L8W6 267 aa4□□□□□ -1.77
VPS41-206ENST00000418457 LRP10Q7Z4F1 713 aa4□□□□□ -1.77
VPS41-206ENST00000418457 WFDC3Q8IUB2 231 aa4□□□□□ -1.77
VPS41-206ENST00000418457 ARHGEF39Q8N4T4 335 aa4□□□□□ -1.77
VPS41-206ENST00000418457 USHBP1Q8N6Y0 703 aa4□□□□□ -1.77
VPS41-206ENST00000418457 ZNF513Q8N8E2 541 aaPredicted RBP4□□□□□ -1.77
VPS41-206ENST00000418457 LINC00116Q8NCU8 138 aa4□□□□□ -1.77
VPS41-206ENST00000418457 LRRN4CLQ8ND94 238 aa4□□□□□ -1.77
VPS41-206ENST00000418457 BVESQ8NE79 360 aa4□□□□□ -1.77
VPS41-206ENST00000418457 ST13P5Q8NFI4 369 aaPredicted RBP4□□□□□ -1.77
VPS41-206ENST00000418457 SYTL4Q96C24 671 aaPredicted RBP4□□□□□ -1.77
VPS41-206ENST00000418457 RCC1LQ96I51 464 aaKnown RBP4□□□□□ -1.77
VPS41-206ENST00000418457 ZDHHC15Q96MV8 337 aa4□□□□□ -1.77
VPS41-206ENST00000418457 SRPK1Q96SB4 655 aaKnown RBP4□□□□□ -1.77
VPS41-206ENST00000418457 FOXP3Q9BZS1 431 aa4□□□□□ -1.77
VPS41-206ENST00000418457 ZSWIM4Q9H7M6 989 aa4□□□□□ -1.77
VPS41-206ENST00000418457 SNTG2Q9NY99 539 aa4□□□□□ -1.77
VPS41-206ENST00000418457 CGGBP1Q9UFW8 167 aaPredicted RBP4□□□□□ -1.77
VPS41-206ENST00000418457 TCFL5Q9UL49 500 aa4□□□□□ -1.77
VPS41-206ENST00000418457 AKT3Q9Y243 479 aa4□□□□□ -1.77
VPS41-206ENST00000418457 IQCA1LA6NCM1 817 aa3.99□□□□□ -1.77
VPS41-206ENST00000418457 ADAMTS4O75173 837 aa3.99□□□□□ -1.77
VPS41-206ENST00000418457 NOP2P46087 812 aaKnown RBP3.99□□□□□ -1.77
VPS41-206ENST00000418457 AMPD2Q01433 879 aa3.99□□□□□ -1.77
VPS41-206ENST00000418457 GRB10Q13322 594 aa3.99□□□□□ -1.77
VPS41-206ENST00000418457 BMS1Q14692 1282 aaKnown RBP3.99□□□□□ -1.77
VPS41-206ENST00000418457 PLCL1Q15111 1095 aa3.99□□□□□ -1.77
VPS41-206ENST00000418457 MTERF2Q49AM1 385 aa3.99□□□□□ -1.77
VPS41-206ENST00000418457 MRFAP1L1Q96HT8 127 aa3.99□□□□□ -1.77
VPS41-206ENST00000418457 CDK11AQ9UQ88 783 aaPredicted RBP3.99□□□□□ -1.77
VPS41-206ENST00000418457 FAM221BA6H8Z2 402 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 IGSF3O75054 1194 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 FKTNO75072 461 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 VAMP4O75379 141 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 ZNF205O95201 554 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 KCNH1O95259 989 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 ITGAVP06756 1048 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 CD3EP07766 207 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 VAV1P15498 845 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 ENDOUP21128 410 aaKnown RBP3.98□□□□□ -1.77
VPS41-206ENST00000418457 RPL10P27635 214 aaKnown RBP3.98□□□□□ -1.77
VPS41-206ENST00000418457 GP2P55259 537 aaKnown RBP3.98□□□□□ -1.77
VPS41-206ENST00000418457 TEKQ02763 1124 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 SLC23A3Q6PIS1 610 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 ZNF227Q86WZ6 799 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 TRIM59Q8IWR1 403 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 LRRC47Q8N1G4 583 aaKnown RBP3.98□□□□□ -1.77
VPS41-206ENST00000418457 PI4K2BQ8TCG2 481 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 ZNF669Q96BR6 464 aaPredicted RBP3.98□□□□□ -1.77
VPS41-206ENST00000418457 SGSM3Q96HU1 749 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 ALPK1Q96QP1 1244 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 LGR4Q9BXB1 951 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 PRDM7Q9NQW5 492 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 SLAMF8Q9P0V8 285 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 EMC9Q9Y3B6 208 aa3.98□□□□□ -1.77
VPS41-206ENST00000418457 GSTM1P09488 218 aa3.97□□□□□ -1.77
VPS41-206ENST00000418457 SSRP1Q08945 709 aaKnown RBP3.97□□□□□ -1.77
VPS41-206ENST00000418457 DPY19L1Q2PZI1 675 aa3.97□□□□□ -1.77
VPS41-206ENST00000418457 GTF2IRD2BQ6EKJ0 949 aa3.97□□□□□ -1.77
VPS41-206ENST00000418457 SPATC1Q76KD6 591 aa3.97□□□□□ -1.77
VPS41-206ENST00000418457 WAPLQ7Z5K2 1190 aa3.97□□□□□ -1.77
VPS41-206ENST00000418457 NBPF11Q86T75 865 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms