RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 KCNQ3O43525 872 aa13.24□□□□□ -0.29
UBR4-205ENST00000417040 IL2RBP14784 551 aa13.24□□□□□ -0.29
UBR4-205ENST00000417040 MX2P20592 715 aa13.24□□□□□ -0.29
UBR4-205ENST00000417040 CROCCP2Q86T23 111 aa13.24□□□□□ -0.29
UBR4-205ENST00000417040 RABGGTAQ92696 567 aa13.24□□□□□ -0.29
UBR4-205ENST00000417040 LSG1Q9H089 658 aaKnown RBP13.24□□□□□ -0.29
UBR4-205ENST00000417040 URB2Q14146 1524 aaKnown RBP13.24□□□□□ -0.29
UBR4-205ENST00000417040 STK10O94804 968 aaKnown RBP13.24□□□□□ -0.29
UBR4-205ENST00000417040 SCYL2Q6P3W7 929 aa13.24□□□□□ -0.29
UBR4-205ENST00000417040 TSPYL2Q9H2G4 693 aaPredicted RBP13.24□□□□□ -0.29
UBR4-205ENST00000417040 AFG3L2Q9Y4W6 797 aa13.24□□□□□ -0.29
UBR4-205ENST00000417040 PSDA5PKW4 1024 aaPredicted RBP13.23□□□□□ -0.29
UBR4-205ENST00000417040 CXorf38Q8TB03 319 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 ANKRD2Q9GZV1 360 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 LRRD1A4D1F6 860 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 CFBP00751 764 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 TNNI1P19237 187 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 GCKRQ14397 625 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 SPATA1Q5VX52 437 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 CCDC84Q86UT8 332 aaPredicted RBP13.23□□□□□ -0.29
UBR4-205ENST00000417040 DDX17Q92841 729 aaKnown RBP13.23□□□□□ -0.29
UBR4-205ENST00000417040 DUOX2Q9NRD8 1548 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 PFDN1O60925 122 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 EFCAB13Q8IY85 973 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 CCDC197Q8NCU1 140 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 ABCB6Q9NP58 842 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 TLR7Q9NYK1 1049 aaKnown RBP13.23□□□□□ -0.29
UBR4-205ENST00000417040 CD2APQ9Y5K6 639 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 SPECC1L-ADORA2AF8WAN1 911 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 PDIA3P30101 505 aaKnown RBP13.23□□□□□ -0.29
UBR4-205ENST00000417040 STAT1P42224 750 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 TBC1D10BQ4KMP7 808 aaPredicted RBP13.23□□□□□ -0.29
UBR4-205ENST00000417040 TPTE2Q6XPS3 522 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 TDRD7Q8NHU6 1098 aaKnown RBP13.23□□□□□ -0.29
UBR4-205ENST00000417040 WHAMMQ8TF30 809 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 EXOC7Q9UPT5 735 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 TRPM2O94759 1503 aa13.23□□□□□ -0.29
UBR4-205ENST00000417040 FTCDO95954 541 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 XRCC5P13010 732 aaKnown RBP13.22□□□□□ -0.29
UBR4-205ENST00000417040 RBM6P78332 1123 aaKnown RBP13.22□□□□□ -0.29
UBR4-205ENST00000417040 LGSNQ5TDP6 509 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 MYOCDQ8IZQ8 938 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 ZNF274Q96GC6 653 aaPredicted RBP13.22□□□□□ -0.29
UBR4-205ENST00000417040 HOMER3Q9NSC5 361 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 FAF1Q9UNN5 650 aaPredicted RBP13.22□□□□□ -0.29
UBR4-205ENST00000417040 ITSN2Q9NZM3 1697 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 LARGE1O95461 756 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 HSPD1P10809 573 aaKnown RBP13.22□□□□□ -0.29
UBR4-205ENST00000417040 PDE6BP35913 854 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 POLE2P56282 527 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 FAM102BQ5T8I3 360 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 PHLDB3Q6NSJ2 640 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 THOC1Q96FV9 657 aaKnown RBP13.22□□□□□ -0.29
UBR4-205ENST00000417040 INTS9Q9NV88 658 aaKnown RBP13.22□□□□□ -0.29
UBR4-205ENST00000417040 RAB20Q9NX57 234 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 TBK1Q9UHD2 729 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 ATP8A1Q9Y2Q0 1164 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.22□□□□□ -0.29
UBR4-205ENST00000417040 DCAF5Q96JK2 942 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 SCYL1Q96KG9 808 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 CNOT6LQ96LI5 555 aaKnown RBP13.22□□□□□ -0.29
UBR4-205ENST00000417040 RAPGEF6Q8TEU7 1601 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 DNM2P50570 870 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 NNTQ13423 1086 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 LRRC8CQ8TDW0 803 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 PPP4R1Q8TF05 950 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 TM6SF1Q9BZW5 370 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 MRPL46Q9H2W6 279 aaKnown RBP13.22□□□□□ -0.29
UBR4-205ENST00000417040 ATF2P15336 505 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 OTUD6AQ7L8S5 288 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 CPXCR1Q8N123 301 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 ANTXR1Q9H6X2 564 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 ANLNQ9NQW6 1124 aa13.22□□□□□ -0.29
UBR4-205ENST00000417040 IBTKQ9P2D0 1353 aaPredicted RBP13.21□□□□□ -0.29
UBR4-205ENST00000417040 ABCC4O15439 1325 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 DCLK2Q8N568 766 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 EAF2Q96CJ1 260 aaPredicted RBP13.21□□□□□ -0.29
UBR4-205ENST00000417040 ST7Q9NRC1 585 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 SAMSN1Q9NSI8 373 aaKnown RBP13.21□□□□□ -0.29
UBR4-205ENST00000417040 PPP2R5AQ15172 486 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 AFAP1L2Q8N4X5 818 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 ZSCAN10Q96SZ4 725 aaPredicted RBP13.21□□□□□ -0.29
UBR4-205ENST00000417040 MAN1B1Q9UKM7 699 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 MAGED2Q9UNF1 606 aaPredicted RBP13.21□□□□□ -0.29
UBR4-205ENST00000417040 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.21□□□□□ -0.29
UBR4-205ENST00000417040 HEXIM1O94992 359 aaKnown RBP13.21□□□□□ -0.29
UBR4-205ENST00000417040 NAA30Q147X3 362 aaPredicted RBP13.21□□□□□ -0.29
UBR4-205ENST00000417040 TTBK2Q6IQ55 1244 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 GSPT2Q8IYD1 628 aaKnown RBP13.21□□□□□ -0.29
UBR4-205ENST00000417040 P3H4Q92791 437 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 SPDL1Q96EA4 605 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 HAUS4Q9H6D7 363 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 PPP1R9AQ9ULJ8 1098 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 GRIN2AQ12879 1464 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 PHLPP2Q6ZVD8 1323 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 PDE8AO60658 829 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 ATP5JP18859 108 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 IL1RL1Q01638 556 aa13.21□□□□□ -0.29
UBR4-205ENST00000417040 CACNB1Q02641 598 aaPredicted RBP13.21□□□□□ -0.29
UBR4-205ENST00000417040 KRT81Q14533 505 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms