RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 SETQ01105 290 aaPredicted RBP3.27□□□□□ -1.89
MCF2-204ENST00000414978 C2orf27AQ580R0 203 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 ARSHQ5FYA8 562 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 AGMOQ6ZNB7 445 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 CBARPQ8N350 705 aaPredicted RBP3.27□□□□□ -1.89
MCF2-204ENST00000414978 GRIP2Q9C0E4 1043 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 TMX1Q9H3N1 280 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 IP6K2Q9UHH9 426 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 TRIM33Q9UPN9 1127 aa3.27□□□□□ -1.89
MCF2-204ENST00000414978 PXDNLA1KZ92 1463 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 DLL1O00548 723 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 DNAJA2O60884 412 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 PLCG1P19174 1290 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 STAT3P40763 770 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 ID4P47928 161 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 PDE3AQ14432 1141 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 ABCB5Q2M3G0 1257 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 INAVAQ3KP66 663 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 EFHC2Q5JST6 749 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 C1QTNF12Q5T7M4 302 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 LHX8Q68G74 356 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 WWC2Q6AWC2 1192 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 LLGL2Q6P1M3 1020 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 DEFB132Q7Z7B7 95 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 TPH2Q8IWU9 490 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 MEIOBQ8N635 442 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 RNF217Q8TC41 542 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 POP1Q99575 1024 aaKnown RBP3.26□□□□□ -1.89
MCF2-204ENST00000414978 TSEN34Q9BSV6 310 aaKnown RBP3.26□□□□□ -1.89
MCF2-204ENST00000414978 INO80BQ9C086 356 aaPredicted RBP3.26□□□□□ -1.89
MCF2-204ENST00000414978 SAGE1Q9NXZ1 904 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 SPATA31A3Q5VYP0 1347 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 BTAF1O14981 1849 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 A0A1W2PQH9 124 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 PDE2AO00408 941 aaPredicted RBP3.26□□□□□ -1.89
MCF2-204ENST00000414978 TBX1O43435 398 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 TYRP1P17643 537 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 VEGFBP49765 207 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 CASP7P55210 303 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 GSTM4Q03013 218 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 LMNB2Q03252 620 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 MTMR1Q13613 665 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 SAFB2Q14151 953 aaKnown RBP eCLIP3.26□□□□□ -1.89
MCF2-204ENST00000414978 HIF1AQ16665 826 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 TUBB8Q3ZCM7 444 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 NYAP1Q6ZVC0 841 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 FAM35AQ86V20 835 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 PHACTR4Q8IZ21 702 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 NKAIN3Q8N8D7 197 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 CARD10Q9BWT7 1032 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 GSX2Q9BZM3 304 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 CEP44Q9C0F1 390 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 LGR6Q9HBX8 967 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 PRSS47A8MTI9 375 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 MEIS1O00470 390 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 MAN1A2O60476 641 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 LDHAP00338 332 aaKnown RBP3.26□□□□□ -1.89
MCF2-204ENST00000414978 GHRHP01286 108 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 KRT18P05783 430 aaKnown RBP3.26□□□□□ -1.89
MCF2-204ENST00000414978 JMJD7P0C870 316 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 HSPA6P17066 643 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 ETF1P62495 437 aaKnown RBP3.26□□□□□ -1.89
MCF2-204ENST00000414978 PABPC4Q13310 644 aaKnown RBP eCLIP3.26□□□□□ -1.89
MCF2-204ENST00000414978 CCINQ13939 588 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 PERM1Q5SV97 790 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 FAM83BQ5T0W9 1011 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 DHX32Q7L7V1 743 aaKnown RBP3.26□□□□□ -1.89
MCF2-204ENST00000414978 LRRN4CLQ8ND94 238 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 KISS1RQ969F8 398 aaPredicted RBP3.26□□□□□ -1.89
MCF2-204ENST00000414978 PLPPR2Q96GM1 343 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 UBE2OQ9C0C9 1292 aaKnown RBP3.26□□□□□ -1.89
MCF2-204ENST00000414978 HCN2Q9UL51 889 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 KCNH4Q9UQ05 1017 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 POLR3KQ9Y2Y1 108 aaPredicted RBP3.26□□□□□ -1.89
MCF2-204ENST00000414978 DAAM1Q9Y4D1 1078 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 TRAF6Q9Y4K3 522 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 TAF1LQ8IZX4 1826 aa3.26□□□□□ -1.89
MCF2-204ENST00000414978 A0A1B0GTH6 734 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 HTR3BO95264 441 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 MT-CO1P00395 513 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 NLRP12P59046 1061 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 CLUL1Q15846 466 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 LCE2DQ5TA82 110 aaPredicted RBP3.25□□□□□ -1.89
MCF2-204ENST00000414978 SPRYD7Q5W111 196 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 DCAF15Q66K64 600 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 PLBD1Q6P4A8 553 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 PDXDC1Q6P996 788 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 LRRTM3Q86VH5 581 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 SPICE1Q8N0Z3 855 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 ZSCAN1Q8NBB4 408 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 OR13H1Q8NG92 308 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 ENOX1Q8TC92 643 aaKnown RBP3.25□□□□□ -1.89
MCF2-204ENST00000414978 BRF1Q92994 677 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 CLUHP3Q96NS8 147 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 STRIP2Q9ULQ0 834 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 ZNF831Q5JPB2 1677 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 NPHP1O15259 732 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 SDSP20132 328 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 GIPRP48546 466 aa3.25□□□□□ -1.89
MCF2-204ENST00000414978 RASGRF1Q13972 1273 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms