RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 IFFO2Q5TF58 517 aa11.2□□□□□ -0.62
RIF1-202ENST00000414861 CST9Q5W186 159 aa11.2□□□□□ -0.62
RIF1-202ENST00000414861 TYW1BQ6NUM6 668 aa11.2□□□□□ -0.62
RIF1-202ENST00000414861 OTUD5Q96G74 571 aa11.2□□□□□ -0.62
RIF1-202ENST00000414861 GBA2Q9HCG7 927 aaPredicted RBP11.2□□□□□ -0.62
RIF1-202ENST00000414861 KCNJ14Q9UNX9 436 aa11.2□□□□□ -0.62
RIF1-202ENST00000414861 SPDYE5A6NIY4 337 aa11.19□□□□□ -0.62
RIF1-202ENST00000414861 IRF6O14896 467 aa11.19□□□□□ -0.62
RIF1-202ENST00000414861 SNAP25P60880 206 aa11.19□□□□□ -0.62
RIF1-202ENST00000414861 KRT40Q6A162 431 aa11.19□□□□□ -0.62
RIF1-202ENST00000414861 WWC2Q6AWC2 1192 aa11.19□□□□□ -0.62
RIF1-202ENST00000414861 WASF1Q92558 559 aa11.19□□□□□ -0.62
RIF1-202ENST00000414861 LPAR1Q92633 364 aa11.19□□□□□ -0.62
RIF1-202ENST00000414861 WDR46O15213 610 aaKnown RBP11.19□□□□□ -0.62
RIF1-202ENST00000414861 PPP1R11O60927 126 aaPredicted RBP11.19□□□□□ -0.62
RIF1-202ENST00000414861 F13A1P00488 732 aa11.19□□□□□ -0.62
RIF1-202ENST00000414861 GJA5P36382 358 aa11.19□□□□□ -0.62
RIF1-202ENST00000414861 STAT2P52630 851 aa11.19□□□□□ -0.62
RIF1-202ENST00000414861 IKQ13123 557 aaPredicted RBP11.19□□□□□ -0.62
RIF1-202ENST00000414861 SYDE2Q5VT97 1194 aa11.19□□□□□ -0.62
RIF1-202ENST00000414861 BTNL9Q6UXG8 535 aa11.19□□□□□ -0.62
RIF1-202ENST00000414861 OPTNQ96CV9 577 aa11.19□□□□□ -0.62
RIF1-202ENST00000414861 MTMR8Q96EF0 704 aa11.19□□□□□ -0.62
RIF1-202ENST00000414861 RRP36Q96EU6 259 aaKnown RBP11.19□□□□□ -0.62
RIF1-202ENST00000414861 TAL1P17542 331 aaPredicted RBP11.18□□□□□ -0.62
RIF1-202ENST00000414861 USP14P54578 494 aa11.18□□□□□ -0.62
RIF1-202ENST00000414861 FOXD4L6Q3SYB3 417 aaPredicted RBP11.18□□□□□ -0.62
RIF1-202ENST00000414861 FOXD4L3Q6VB84 417 aaPredicted RBP11.18□□□□□ -0.62
RIF1-202ENST00000414861 HEATR3Q7Z4Q2 680 aa11.18□□□□□ -0.62
RIF1-202ENST00000414861 ERO1BQ86YB8 467 aa11.18□□□□□ -0.62
RIF1-202ENST00000414861 C12orf42Q96LP6 360 aa11.18□□□□□ -0.62
RIF1-202ENST00000414861 RBM27Q9P2N5 1060 aaKnown RBP11.18□□□□□ -0.62
RIF1-202ENST00000414861 PRR12Q9ULL5 1215 aa11.18□□□□□ -0.62
RIF1-202ENST00000414861 COL11A1P12107 1806 aaPredicted RBP11.18□□□□□ -0.62
RIF1-202ENST00000414861 KIF28PB7ZC32 967 aa11.18□□□□□ -0.62
RIF1-202ENST00000414861 STXBP3O00186 592 aa11.18□□□□□ -0.62
RIF1-202ENST00000414861 ADAMTS3O15072 1205 aa11.18□□□□□ -0.62
RIF1-202ENST00000414861 PPATQ06203 517 aa11.18□□□□□ -0.62
RIF1-202ENST00000414861 RESTQ13127 1097 aa11.18□□□□□ -0.62
RIF1-202ENST00000414861 NPY5RQ15761 445 aa11.18□□□□□ -0.62
RIF1-202ENST00000414861 CDC37Q16543 378 aaPredicted RBP11.18□□□□□ -0.62
RIF1-202ENST00000414861 SAMD1Q6SPF0 538 aaPredicted RBP11.18□□□□□ -0.62
RIF1-202ENST00000414861 RPAP3Q9H6T3 665 aaPredicted RBP11.18□□□□□ -0.62
RIF1-202ENST00000414861 SEC63Q9UGP8 760 aaKnown RBP11.18□□□□□ -0.62
RIF1-202ENST00000414861 PASKQ96RG2 1323 aa11.18□□□□□ -0.62
RIF1-202ENST00000414861 C19orf81C9J6K1 198 aa11.17□□□□□ -0.62
RIF1-202ENST00000414861 FKBP1BP68106 108 aa11.17□□□□□ -0.62
RIF1-202ENST00000414861 QRICH1Q2TAL8 776 aa11.17□□□□□ -0.62
RIF1-202ENST00000414861 MCTP1Q6DN14 999 aa11.17□□□□□ -0.62
RIF1-202ENST00000414861 FAM173BQ6P4H8 233 aa11.17□□□□□ -0.62
RIF1-202ENST00000414861 KIFC2Q96AC6 838 aa11.17□□□□□ -0.62
RIF1-202ENST00000414861 TANGO6Q9C0B7 1094 aa11.17□□□□□ -0.62
RIF1-202ENST00000414861 ZBTB5O15062 677 aa11.17□□□□□ -0.62
RIF1-202ENST00000414861 MMP1P03956 469 aa11.17□□□□□ -0.62
RIF1-202ENST00000414861 KIF23Q02241 960 aaPredicted RBP11.17□□□□□ -0.62
RIF1-202ENST00000414861 PPIL2Q13356 520 aa11.17□□□□□ -0.62
RIF1-202ENST00000414861 SH3D19Q5HYK7 790 aa11.17□□□□□ -0.62
RIF1-202ENST00000414861 OXER1Q8TDS5 423 aa11.17□□□□□ -0.62
RIF1-202ENST00000414861 PHF20Q9BVI0 1012 aa11.17□□□□□ -0.62
RIF1-202ENST00000414861 BARHL2Q9NY43 387 aa11.17□□□□□ -0.62
RIF1-202ENST00000414861 A0A0G2JLL6 359 aaPredicted RBP11.16□□□□□ -0.62
RIF1-202ENST00000414861 PNMA6FA0A0J9YX94 578 aa11.16□□□□□ -0.62
RIF1-202ENST00000414861 TRIM29Q14134 588 aa11.16□□□□□ -0.62
RIF1-202ENST00000414861 TREML2Q5T2D2 321 aa11.16□□□□□ -0.62
RIF1-202ENST00000414861 PRRT2Q7Z6L0 340 aaPredicted RBP11.16□□□□□ -0.62
RIF1-202ENST00000414861 C2orf69Q8N8R5 385 aa11.16□□□□□ -0.62
RIF1-202ENST00000414861 RBM46Q8TBY0 533 aaKnown RBP11.16□□□□□ -0.62
RIF1-202ENST00000414861 COA7Q96BR5 231 aa11.16□□□□□ -0.62
RIF1-202ENST00000414861 FEM1BQ9UK73 627 aa11.16□□□□□ -0.62
RIF1-202ENST00000414861 KCNH4Q9UQ05 1017 aa11.16□□□□□ -0.62
RIF1-202ENST00000414861 PLA2G6O60733 806 aa11.16□□□□□ -0.62
RIF1-202ENST00000414861 FLOT1O75955 427 aa11.16□□□□□ -0.62
RIF1-202ENST00000414861 WNK4Q96J92 1243 aa11.16□□□□□ -0.62
RIF1-202ENST00000414861 TMOD4Q9NZQ9 345 aa11.16□□□□□ -0.62
RIF1-202ENST00000414861 BTBD18B2RXH4 712 aa11.15□□□□□ -0.62
RIF1-202ENST00000414861 PDIA4P13667 645 aaKnown RBP11.15□□□□□ -0.62
RIF1-202ENST00000414861 NR5A1Q13285 461 aa11.15□□□□□ -0.62
RIF1-202ENST00000414861 MOGSQ13724 837 aa11.15□□□□□ -0.62
RIF1-202ENST00000414861 FAM160B2Q86V87 743 aa11.15□□□□□ -0.62
RIF1-202ENST00000414861 DIS3L2Q8IYB7 885 aaKnown RBP11.15□□□□□ -0.62
RIF1-202ENST00000414861 CHURC1Q8WUH1 139 aa11.15□□□□□ -0.62
RIF1-202ENST00000414861 SLC10A4Q96EP9 437 aa11.15□□□□□ -0.62
RIF1-202ENST00000414861 SLF1Q9BQI6 1058 aa11.15□□□□□ -0.62
RIF1-202ENST00000414861 NAPAP54920 295 aa11.15□□□□□ -0.62
RIF1-202ENST00000414861 MKRN3Q13064 507 aaKnown RBP11.15□□□□□ -0.62
RIF1-202ENST00000414861 NOM1Q5C9Z4 860 aaKnown RBP11.15□□□□□ -0.62
RIF1-202ENST00000414861 SMC1BQ8NDV3 1235 aa11.15□□□□□ -0.62
RIF1-202ENST00000414861 RGS22Q8NE09 1264 aa11.15□□□□□ -0.62
RIF1-202ENST00000414861 RANBP17Q9H2T7 1088 aaKnown RBP11.15□□□□□ -0.62
RIF1-202ENST00000414861 SH3GLB2Q9NR46 395 aa11.15□□□□□ -0.62
RIF1-202ENST00000414861 PPP1R9AQ9ULJ8 1098 aa11.15□□□□□ -0.62
RIF1-202ENST00000414861 A0A0G2JMZ2 1700 aa11.14□□□□□ -0.63
RIF1-202ENST00000414861 UNCXA6NJT0 531 aa11.14□□□□□ -0.63
RIF1-202ENST00000414861 CXCL11O14625 94 aa11.14□□□□□ -0.63
RIF1-202ENST00000414861 BAG4O95429 457 aaKnown RBP11.14□□□□□ -0.63
RIF1-202ENST00000414861 XBP1P17861 261 aa11.14□□□□□ -0.63
RIF1-202ENST00000414861 YY1P25490 414 aa11.14□□□□□ -0.63
RIF1-202ENST00000414861 HUNKP57058 714 aa11.14□□□□□ -0.63
RIF1-202ENST00000414861 USH1GQ495M9 461 aa11.14□□□□□ -0.63
RIF1-202ENST00000414861 CCDC174Q6PII3 467 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms