RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 SERTAD1Q9UHV2 236 aa12.54□□□□□ -0.4
TTC28-201ENST00000397906 CEP104O60308 925 aa12.54□□□□□ -0.4
TTC28-201ENST00000397906 XRCC5P13010 732 aaKnown RBP12.54□□□□□ -0.4
TTC28-201ENST00000397906 FANCCQ00597 558 aa12.54□□□□□ -0.4
TTC28-201ENST00000397906 C8orf74Q6P047 294 aa12.54□□□□□ -0.4
TTC28-201ENST00000397906 U2AF1L4Q8WU68 220 aaKnown RBP12.53□□□□□ -0.4
TTC28-201ENST00000397906 MED23Q9ULK4 1368 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 PTH1RQ03431 593 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 PPP2R5BQ15173 497 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 ME3Q16798 604 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 SUPT20HL1Q3ZLR7 823 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 SLFN12Q8IYM2 578 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 VPS52Q8N1B4 723 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 USP44Q9H0E7 712 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 SETD1BQ9UPS6 1966 aaKnown RBP12.53□□□□□ -0.4
TTC28-201ENST00000397906 PLEKHG3A1L390 1219 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 SECISBP2LQ93073 1101 aaKnown RBP12.53□□□□□ -0.4
TTC28-201ENST00000397906 KDM5CP41229 1560 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 MMP10P09238 476 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 SNAP25P60880 206 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 NLRP7Q8WX94 980 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 EPSTI1Q96J88 318 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 TBC1D8O95759 1140 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 FGAP02671 866 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 HSPD1P10809 573 aaKnown RBP12.53□□□□□ -0.4
TTC28-201ENST00000397906 YWHAEP62258 255 aaKnown RBP12.53□□□□□ -0.4
TTC28-201ENST00000397906 PPP2R3AQ06190 1150 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 SKA2Q8WVK7 121 aaPredicted RBP12.53□□□□□ -0.4
TTC28-201ENST00000397906 EAF2Q96CJ1 260 aaPredicted RBP12.53□□□□□ -0.4
TTC28-201ENST00000397906 NUB1Q9Y5A7 615 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 TRIM14Q14142 442 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 CCDC93Q567U6 631 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 EEF2KMTQ96G04 330 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 MYOM2P54296 1465 aa12.53□□□□□ -0.4
TTC28-201ENST00000397906 M0R2C6 588 aa12.52□□□□□ -0.4
TTC28-201ENST00000397906 ACTN4O43707 911 aaKnown RBP12.52□□□□□ -0.4
TTC28-201ENST00000397906 SCG2P13521 617 aa12.52□□□□□ -0.4
TTC28-201ENST00000397906 SF3A3Q12874 501 aaKnown RBP eCLIP12.52□□□□□ -0.49e-7■■■□□ 18.2
TTC28-201ENST00000397906 ZNF577Q9BSK1 485 aa12.52□□□□□ -0.4
TTC28-201ENST00000397906 NEO1Q92859 1461 aa12.52□□□□□ -0.4
TTC28-201ENST00000397906 BLMP54132 1417 aaPredicted RBP12.52□□□□□ -0.4
TTC28-201ENST00000397906 USP14P54578 494 aa12.52□□□□□ -0.4
TTC28-201ENST00000397906 NEK8Q86SG6 692 aa12.52□□□□□ -0.4
TTC28-201ENST00000397906 FAM178BQ8IXR5 827 aa12.52□□□□□ -0.4
TTC28-201ENST00000397906 NME8Q8N427 588 aa12.52□□□□□ -0.4
TTC28-201ENST00000397906 GABPB2Q8TAK5 448 aaPredicted RBP12.52□□□□□ -0.4
TTC28-201ENST00000397906 POMGNT1Q8WZA1 660 aa12.52□□□□□ -0.4
TTC28-201ENST00000397906 NKIRAS1Q9NYS0 192 aa12.52□□□□□ -0.4
TTC28-201ENST00000397906 COBLO75128 1261 aa12.52□□□□□ -0.4
TTC28-201ENST00000397906 MARK3P27448 753 aa12.52□□□□□ -0.4
TTC28-201ENST00000397906 IREB2P48200 963 aaKnown RBP12.52□□□□□ -0.4
TTC28-201ENST00000397906 PER1O15534 1290 aaPredicted RBP12.52□□□□□ -0.41
TTC28-201ENST00000397906 RRP9O43818 475 aaKnown RBP12.52□□□□□ -0.41
TTC28-201ENST00000397906 ADD1P35611 737 aaKnown RBP12.52□□□□□ -0.41
TTC28-201ENST00000397906 PPM1KQ8N3J5 372 aa12.52□□□□□ -0.41
TTC28-201ENST00000397906 PRIMPOLQ96LW4 560 aa12.52□□□□□ -0.41
TTC28-201ENST00000397906 KDM5DQ9BY66 1539 aa12.52□□□□□ -0.41
TTC28-201ENST00000397906 RIOK3O14730 519 aaKnown RBP12.52□□□□□ -0.41
TTC28-201ENST00000397906 GADD45BO75293 160 aaPredicted RBP12.52□□□□□ -0.41
TTC28-201ENST00000397906 TTLL1O95922 423 aa12.52□□□□□ -0.41
TTC28-201ENST00000397906 TLR7Q9NYK1 1049 aaKnown RBP12.52□□□□□ -0.41
TTC28-201ENST00000397906 ZMYM6O95789 1325 aa12.52□□□□□ -0.41
TTC28-201ENST00000397906 VIMP08670 466 aaKnown RBP12.52□□□□□ -0.41
TTC28-201ENST00000397906 TTLL6Q8N841 843 aa12.52□□□□□ -0.41
TTC28-201ENST00000397906 RSAD2Q8WXG1 361 aa12.52□□□□□ -0.41
TTC28-201ENST00000397906 NAPGQ99747 312 aaPredicted RBP12.52□□□□□ -0.41
TTC28-201ENST00000397906 SAMD15Q9P1V8 674 aa12.52□□□□□ -0.41
TTC28-201ENST00000397906 TLR3O15455 904 aaKnown RBP12.52□□□□□ -0.41
TTC28-201ENST00000397906 NLRP12P59046 1061 aa12.52□□□□□ -0.41
TTC28-201ENST00000397906 LRCH2Q5VUJ6 765 aa12.52□□□□□ -0.41
TTC28-201ENST00000397906 FANCBQ8NB91 859 aa12.52□□□□□ -0.41
TTC28-201ENST00000397906 CAPN2P17655 700 aa12.52□□□□□ -0.41
TTC28-201ENST00000397906 SLC10A4Q96EP9 437 aa12.52□□□□□ -0.41
TTC28-201ENST00000397906 PDE8BO95263 885 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 STAT2P52630 851 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 OSTNP61366 133 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 ARMCX5Q6P1M9 558 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 SLC39A2Q9NP94 309 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 NRBP2Q9NSY0 501 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 PTPRTO14522 1441 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 RABGAP1Q9Y3P9 1069 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 IL6STP40189 918 aaPredicted RBP12.51□□□□□ -0.41
TTC28-201ENST00000397906 SETDB1Q15047 1291 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 C1orf112Q9NSG2 853 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 LEMD3Q9Y2U8 911 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 MICAL1Q8TDZ2 1067 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 KIF1BO60333 1816 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 FMNL1O95466 1100 aaPredicted RBP12.51□□□□□ -0.41
TTC28-201ENST00000397906 CCDC121Q6ZUS5 278 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 GOLGA6CA6NDK9 693 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 GOLGA6BA6NDN3 693 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 GOLGA6DP0CG33 693 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 KSR1Q8IVT5 923 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 GOLGA6AQ9NYA3 693 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 KDM2BQ8NHM5 1336 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 HNRNPDLO14979 420 aaKnown RBP12.51□□□□□ -0.41
TTC28-201ENST00000397906 DIXDC1Q155Q3 683 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 KIAA1841Q6NSI8 718 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 PEX26Q7Z412 305 aa12.51□□□□□ -0.41
TTC28-201ENST00000397906 NOSTRINQ8IVI9 506 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms