RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 HIP1RO75146 1068 aa11.27□□□□□ -0.6
LIMCH1-203ENST00000396595 MAP3K21Q5TCX8 1036 aa11.27□□□□□ -0.6
LIMCH1-203ENST00000396595 BLIDQ8IZY5 108 aa11.27□□□□□ -0.6
LIMCH1-203ENST00000396595 ANKRD42Q8N9B4 389 aa11.27□□□□□ -0.6
LIMCH1-203ENST00000396595 JDP2Q8WYK2 163 aa11.27□□□□□ -0.6
LIMCH1-203ENST00000396595 PYCARDQ9ULZ3 195 aa11.27□□□□□ -0.6
LIMCH1-203ENST00000396595 TBC1D8O95759 1140 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 HSP90AA5PQ58FG0 334 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 CCDC89Q8N998 374 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 ATP2A3Q93084 1043 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 EAF2Q96CJ1 260 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 EDC3Q96F86 508 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 CDCA7Q9BWT1 371 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 STAP2Q9UGK3 403 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 CTTNBP2Q8WZ74 1663 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 hCG_1642624A0A1W2PR95 340 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 IRX4P78413 519 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 ARHGAP44Q17R89 818 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 RBM26Q5T8P6 1007 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 MCTP2Q6DN12 878 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 SRGAP1Q7Z6B7 1085 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 GRK7Q8WTQ7 553 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 IRAK4Q9NWZ3 460 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 RTEL1Q9NZ71 1219 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 BICRAQ9NZM4 1560 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 SMCO2A6NFE2 343 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 SPECC1L-ADORA2AF8WAN1 911 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 TAF5LO75529 589 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 KCNA6P17658 529 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 FANCBQ8NB91 859 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 STAG1Q8WVM7 1258 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 HAUS7Q99871 368 aa11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 ARMCX3Q9UH62 379 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-203ENST00000396595 HSPD1P10809 573 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 CD19P15391 556 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 ATICP31939 592 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 GALNT17Q6IS24 598 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 MKL2Q9ULH7 1088 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 KDRP35968 1356 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 NDUFA8P51970 172 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 SATB1Q01826 763 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 RAD51AP2Q09MP3 1159 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 FBXO18Q8NFZ0 1043 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 PFDN4Q9NQP4 134 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 FAN1Q9Y2M0 1017 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 PCDHB13Q9Y5F0 798 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 H2AFZP0C0S5 128 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 H2AFVQ71UI9 128 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 CCDC117Q8IWD4 279 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 MGARPQ8TDB4 240 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 RIC8AQ9NPQ8 531 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 MAST1Q9Y2H9 1570 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 GNPATO15228 680 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 PSMD6Q15008 389 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 ZNF827Q17R98 1081 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 TRAPPC3LQ5T215 181 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 ZNF496Q96IT1 587 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 ADGRL2O95490 1459 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 ADD1P35611 737 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 GPBP1Q86WP2 473 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 VTI1AQ96AJ9 217 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 PPP1R13BQ96KQ4 1090 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 PPP1R9AQ9ULJ8 1098 aa11.26□□□□□ -0.61
LIMCH1-203ENST00000396595 N4BP1O75113 896 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 TRIM37O94972 964 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 PHBP35232 272 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 ATP1A2P50993 1020 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 RNF34Q969K3 372 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 OSBPL3Q9H4L5 887 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 METTL14Q9HCE5 456 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 ADCY9O60503 1353 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 PLXNC1O60486 1568 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 IKBKBO14920 756 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 OR52Z1P0C646 297 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 YWHAEP62258 255 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 MAEAQ7L5Y9 396 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 RILPQ96NA2 401 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 EIF2AQ9BY44 585 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 LSG1Q9H089 658 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 MAGEF1Q9HAY2 307 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 TYW1Q9NV66 732 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 STK38LQ9Y2H1 464 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 KIF1CO43896 1103 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 PPARDQ03181 441 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 IFNL3Q8IZI9 196 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 TBC1D22AQ8WUA7 517 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 ZSCAN10Q96SZ4 725 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 PDE11AQ9HCR9 933 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 SH3BP5O60239 455 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 RANBP1P43487 201 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 COPB1P53618 953 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 MAP4K1Q92918 833 aa11.25□□□□□ -0.61
LIMCH1-203ENST00000396595 BTBD18B2RXH4 712 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 RPN1P04843 607 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 ABCB4P21439 1286 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 PDIA3P30101 505 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 LIG3P49916 1009 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 TCIRG1Q13488 830 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 TAF12Q16514 161 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms