RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 KRT40Q6A162 431 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 SYT10Q6XYQ8 523 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 CATIPQ7Z7H3 387 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 FOXP4Q8IVH2 680 aaPredicted RBP6.1□□□□□ -1.43
VPS41-203ENST00000395969 CCAR2Q8N163 923 aaKnown RBP6.1□□□□□ -1.43
VPS41-203ENST00000395969 MRFAP1L1Q96HT8 127 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 TRIM5Q9C035 493 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 OSBPL5Q9H0X9 879 aaPredicted RBP6.1□□□□□ -1.43
VPS41-203ENST00000395969 NUP62CLQ9H1M0 184 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 STK32BQ9NY57 414 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 FBXO2Q9UK22 296 aaPredicted RBP6.1□□□□□ -1.43
VPS41-203ENST00000395969 MYH7BA7E2Y1 1941 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 ERICH2A1L162 156 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 CCDC69A6NI79 296 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 GOLGA8AA7E2F4 631 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 MYO1CO00159 1063 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 IFIT3O14879 490 aaKnown RBP6.1□□□□□ -1.43
VPS41-203ENST00000395969 DTNBO60941 627 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 APBA3O96018 575 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 ATP2C1P98194 919 aaPredicted RBP6.1□□□□□ -1.43
VPS41-203ENST00000395969 TEX35Q5T0J7 233 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 DRC7Q8IY82 874 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 TRIM22Q8IYM9 498 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 IQUBQ8NA54 791 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 SH3RF3Q8TEJ3 882 aaPredicted RBP6.1□□□□□ -1.43
VPS41-203ENST00000395969 DCAF4Q8WV16 495 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 SPATA32Q96LK8 384 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 NAP1L4Q99733 375 aaKnown RBP6.1□□□□□ -1.43
VPS41-203ENST00000395969 CUEDC2Q9H467 287 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 RAI14Q9P0K7 980 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 KIAA1522Q9P206 1035 aaPredicted RBP6.1□□□□□ -1.43
VPS41-203ENST00000395969 HERC5Q9UII4 1024 aaKnown RBP6.1□□□□□ -1.43
VPS41-203ENST00000395969 CYP3A7-CYP3A51PA0A087WV96 503 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 KIF28PB7ZC32 967 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 USP17L12C9JPN9 530 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 USP17L21D6R901 530 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 CYP3A7P24462 503 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 CASQ1P31415 396 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 TPM4P67936 248 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 ARID5BQ14865 1188 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 HYIQ5T013 277 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 KANK3Q6NY19 840 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 SYNE3Q6ZMZ3 975 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 BARHL2Q9NY43 387 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 PNMA2Q9UL42 364 aa6.1□□□□□ -1.43
VPS41-203ENST00000395969 H0YIN7 160 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 PIK3CDO00329 1044 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 MMP10P09238 476 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 LIG1P18858 919 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 BTDP43251 543 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 DYNLL1P63167 89 aaKnown RBP6.09□□□□□ -1.43
VPS41-203ENST00000395969 CTDSPL2Q05D32 466 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 IQCB1Q15051 598 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 SKIDA1Q1XH10 827 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 ERCC6LQ2NKX8 1250 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 KRBA2Q6ZNG9 492 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 VPS37DQ86XT2 251 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 DZIP1Q86YF9 867 aaKnown RBP6.09□□□□□ -1.43
VPS41-203ENST00000395969 AMOTL1Q8IY63 956 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 NEK11Q8NG66 645 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 MRPS27Q92552 414 aaKnown RBP6.09□□□□□ -1.43
VPS41-203ENST00000395969 USP28Q96RU2 1077 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 ALG1Q9BT22 464 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 BRMS1Q9HCU9 246 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 PSD3Q9NYI0 1048 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 PCDHA7Q9UN72 937 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 POLR3GO15318 223 aaPredicted RBP6.09□□□□□ -1.43
VPS41-203ENST00000395969 SKILP12757 684 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 SCG2P13521 617 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 XBP1P17861 261 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 CDK8P49336 464 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 GTF2A1P52655 376 aaPredicted RBP6.09□□□□□ -1.43
VPS41-203ENST00000395969 IFIT1BQ5T764 474 aaKnown RBP6.09□□□□□ -1.43
VPS41-203ENST00000395969 ICE2Q659A1 982 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 SRLQ86TD4 932 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 SMARCE1Q969G3 411 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 AK8Q96MA6 479 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 UBAC1Q9BSL1 405 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 SENP2Q9HC62 589 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 MTMR4Q9NYA4 1195 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 MAP3K20Q9NYL2 800 aaKnown RBP6.09□□□□□ -1.43
VPS41-203ENST00000395969 LCMT1Q9UIC8 334 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 ZNF330Q9Y3S2 320 aaPredicted RBP6.09□□□□□ -1.43
VPS41-203ENST00000395969 STK24Q9Y6E0 443 aa6.09□□□□□ -1.43
VPS41-203ENST00000395969 ZNF536O15090 1300 aa6.09□□□□□ -1.44
VPS41-203ENST00000395969 CNTNAP1P78357 1384 aa6.08□□□□□ -1.44
VPS41-203ENST00000395969 USP17L3A6NCW0 530 aa6.08□□□□□ -1.44
VPS41-203ENST00000395969 USP17L4A6NCW7 530 aa6.08□□□□□ -1.44
VPS41-203ENST00000395969 WTIPA6NIX2 430 aaPredicted RBP6.08□□□□□ -1.44
VPS41-203ENST00000395969 STXBP3O00186 592 aa6.08□□□□□ -1.44
VPS41-203ENST00000395969 TUBB4AP04350 444 aa6.08□□□□□ -1.44
VPS41-203ENST00000395969 MUTP22033 750 aa6.08□□□□□ -1.44
VPS41-203ENST00000395969 SHMT1P34896 483 aa6.08□□□□□ -1.44
VPS41-203ENST00000395969 GRIK5Q16478 980 aa6.08□□□□□ -1.44
VPS41-203ENST00000395969 SLC35G1Q2M3R5 365 aa6.08□□□□□ -1.44
VPS41-203ENST00000395969 GPATCH4Q5T3I0 446 aaKnown RBP6.08□□□□□ -1.44
VPS41-203ENST00000395969 USP17L1Q7RTZ2 530 aa6.08□□□□□ -1.44
VPS41-203ENST00000395969 STK11IPQ8N1F8 1099 aa6.08□□□□□ -1.44
VPS41-203ENST00000395969 LRRN4CLQ8ND94 238 aa6.08□□□□□ -1.44
VPS41-203ENST00000395969 CCDC148Q8NFR7 591 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms