RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 RASSF8Q8NHQ8 419 aa23.25■■□□□ 1.31
CLK3-202ENST00000395066 RHOXF2Q9BQY4 288 aa23.25■■□□□ 1.31
CLK3-202ENST00000395066 TSPYL1Q9H0U9 437 aa23.25■■□□□ 1.31
CLK3-202ENST00000395066 TMEM60Q9H2L4 133 aa23.25■■□□□ 1.31
CLK3-202ENST00000395066 CPVLQ9H3G5 476 aa23.25■■□□□ 1.31
CLK3-202ENST00000395066 CDC23Q9UJX2 597 aa23.25■■□□□ 1.31
CLK3-202ENST00000395066 SCN7AQ01118 1682 aa23.24■■□□□ 1.31
CLK3-202ENST00000395066 MAP2K7O14733 419 aa23.24■■□□□ 1.31
CLK3-202ENST00000395066 SEMA3EO15041 775 aa23.24■■□□□ 1.31
CLK3-202ENST00000395066 TFAP4Q01664 338 aa23.24■■□□□ 1.31
CLK3-202ENST00000395066 BLIDQ8IZY5 108 aa23.24■■□□□ 1.31
CLK3-202ENST00000395066 IL17RBQ9NRM6 502 aa23.24■■□□□ 1.31
CLK3-202ENST00000395066 H3BQF6 201 aa23.24■■□□□ 1.31
CLK3-202ENST00000395066 ZNF658Q5TYW1 1059 aaPredicted RBP23.24■■□□□ 1.31
CLK3-202ENST00000395066 WWC2Q6AWC2 1192 aa23.24■■□□□ 1.31
CLK3-202ENST00000395066 EXOC4Q96A65 974 aa23.24■■□□□ 1.31
CLK3-202ENST00000395066 ADAM21Q9UKJ8 722 aa23.24■■□□□ 1.31
CLK3-202ENST00000395066 DLEC1Q9Y238 1755 aa23.24■■□□□ 1.31
CLK3-202ENST00000395066 USP17L3A6NCW0 530 aa23.23■■□□□ 1.31
CLK3-202ENST00000395066 USP17L4A6NCW7 530 aa23.23■■□□□ 1.31
CLK3-202ENST00000395066 HIBADHP31937 336 aaKnown RBP23.23■■□□□ 1.31
CLK3-202ENST00000395066 ARHGAP25P42331 645 aa23.23■■□□□ 1.31
CLK3-202ENST00000395066 ZSCAN26Q16670 478 aa23.23■■□□□ 1.31
CLK3-202ENST00000395066 SLC35G1Q2M3R5 365 aa23.23■■□□□ 1.31
CLK3-202ENST00000395066 USP17L1Q7RTZ2 530 aa23.23■■□□□ 1.31
CLK3-202ENST00000395066 IRF2BP1Q8IU81 584 aa23.23■■□□□ 1.31
CLK3-202ENST00000395066 SPATA31A1Q5TZJ5 1347 aa23.23■■□□□ 1.31
CLK3-202ENST00000395066 CTAGE9A4FU28 777 aa23.23■■□□□ 1.31
CLK3-202ENST00000395066 NAALADL2Q58DX5 795 aa23.23■■□□□ 1.31
CLK3-202ENST00000395066 SLC44A5Q8NCS7 719 aa23.23■■□□□ 1.31
CLK3-202ENST00000395066 LRRC15Q8TF66 581 aa23.23■■□□□ 1.31
CLK3-202ENST00000395066 KAT14Q9H8E8 782 aa23.23■■□□□ 1.31
CLK3-202ENST00000395066 SRP68Q9UHB9 627 aaKnown RBP23.23■■□□□ 1.31
CLK3-202ENST00000395066 INF2Q27J81 1249 aa23.22■■□□□ 1.31
CLK3-202ENST00000395066 CEP112Q8N8E3 955 aa23.22■■□□□ 1.31
CLK3-202ENST00000395066 PSD3Q9NYI0 1048 aa23.22■■□□□ 1.31
CLK3-202ENST00000395066 ITIH6Q6UXX5 1313 aa23.22■■□□□ 1.31
CLK3-202ENST00000395066 PNMA1Q8ND90 353 aa23.22■■□□□ 1.31
CLK3-202ENST00000395066 HNRNPLLQ8WVV9 542 aaKnown RBP23.22■■□□□ 1.31
CLK3-202ENST00000395066 LRRC10BA6NIK2 292 aa23.21■■□□□ 1.31
CLK3-202ENST00000395066 RPS8P62241 208 aaKnown RBP23.21■■□□□ 1.31
CLK3-202ENST00000395066 PTF1AQ7RTS3 328 aa23.21■■□□□ 1.31
CLK3-202ENST00000395066 CASZ1Q86V15 1759 aa23.21■■□□□ 1.31
CLK3-202ENST00000395066 PARP1P09874 1014 aaKnown RBP23.21■■□□□ 1.31
CLK3-202ENST00000395066 GOLGA8HP0CJ92 632 aa23.21■■□□□ 1.31
CLK3-202ENST00000395066 PCP11498 1178 aaKnown RBP23.21■■□□□ 1.31
CLK3-202ENST00000395066 MCM6Q14566 821 aa23.21■■□□□ 1.31
CLK3-202ENST00000395066 NCAPH2Q6IBW4 605 aa23.21■■□□□ 1.31
CLK3-202ENST00000395066 TMTC1Q8IUR5 882 aa23.21■■□□□ 1.31
CLK3-202ENST00000395066 DISC1Q9NRI5 854 aa23.21■■□□□ 1.31
CLK3-202ENST00000395066 FEZ2Q9UHY8 353 aaPredicted RBP23.21■■□□□ 1.31
CLK3-202ENST00000395066 REXO2Q9Y3B8 237 aaKnown RBP23.21■■□□□ 1.31
CLK3-202ENST00000395066 TTC26A0AVF1 554 aa23.2■■□□□ 1.3
CLK3-202ENST00000395066 TRAPPC10P48553 1259 aa23.2■■□□□ 1.3
CLK3-202ENST00000395066 LMAN1P49257 510 aa23.2■■□□□ 1.3
CLK3-202ENST00000395066 RNF216Q9NWF9 866 aaPredicted RBP23.2■■□□□ 1.3
CLK3-202ENST00000395066 GUCA1BQ9UMX6 200 aa23.2■■□□□ 1.3
CLK3-202ENST00000395066 TTF2Q9UNY4 1162 aaKnown RBP23.2■■□□□ 1.3
CLK3-202ENST00000395066 POTEB2H3BUK9 544 aa23.2■■□□□ 1.3
CLK3-202ENST00000395066 BEND6Q5SZJ8 279 aaPredicted RBP23.2■■□□□ 1.3
CLK3-202ENST00000395066 CYP26C1Q6V0L0 522 aa23.2■■□□□ 1.3
CLK3-202ENST00000395066 HEATR3Q7Z4Q2 680 aa23.2■■□□□ 1.3
CLK3-202ENST00000395066 ATP8A2Q9NTI2 1148 aa23.2■■□□□ 1.3
CLK3-202ENST00000395066 ARPP21Q9UBL0 812 aaPredicted RBP23.2■■□□□ 1.3
CLK3-202ENST00000395066 WNK3Q9BYP7 1800 aa23.2■■□□□ 1.3
CLK3-202ENST00000395066 ENC1O14682 589 aa23.19■■□□□ 1.3
CLK3-202ENST00000395066 FECHP22830 423 aa23.19■■□□□ 1.3
CLK3-202ENST00000395066 GRIK5Q16478 980 aa23.19■■□□□ 1.3
CLK3-202ENST00000395066 DZIP1Q86YF9 867 aaKnown RBP23.19■■□□□ 1.3
CLK3-202ENST00000395066 PCDHA4Q9UN74 947 aa23.19■■□□□ 1.3
CLK3-202ENST00000395066 CYTH3O43739 400 aa23.19■■□□□ 1.3
CLK3-202ENST00000395066 USP5P45974 858 aa23.19■■□□□ 1.3
CLK3-202ENST00000395066 DIXDC1Q155Q3 683 aa23.19■■□□□ 1.3
CLK3-202ENST00000395066 NOA1Q8NC60 698 aaKnown RBP23.19■■□□□ 1.3
CLK3-202ENST00000395066 CCDC51Q96ER9 411 aa23.19■■□□□ 1.3
CLK3-202ENST00000395066 NAPGQ99747 312 aaPredicted RBP23.19■■□□□ 1.3
CLK3-202ENST00000395066 HDAC6Q9UBN7 1215 aa23.19■■□□□ 1.3
CLK3-202ENST00000395066 RAB21Q9UL25 225 aa23.19■■□□□ 1.3
CLK3-202ENST00000395066 CCDC194A0A1B0GVG4 234 aa23.18■■□□□ 1.3
CLK3-202ENST00000395066 LONP1P36776 959 aaKnown RBP23.18■■□□□ 1.3
CLK3-202ENST00000395066 HDXQ7Z353 690 aa23.18■■□□□ 1.3
CLK3-202ENST00000395066 MSANTD4Q8NCY6 345 aa23.18■■□□□ 1.3
CLK3-202ENST00000395066 GOLGA5Q8TBA6 731 aa23.18■■□□□ 1.3
CLK3-202ENST00000395066 NUTM2BA6NNL0 878 aaPredicted RBP23.18■■□□□ 1.3
CLK3-202ENST00000395066 NUTM2EB1AL46 878 aaPredicted RBP23.18■■□□□ 1.3
CLK3-202ENST00000395066 KIF5BP33176 963 aa23.18■■□□□ 1.3
CLK3-202ENST00000395066 KLK7P49862 253 aa23.18■■□□□ 1.3
CLK3-202ENST00000395066 TUBB2AQ13885 445 aa23.18■■□□□ 1.3
CLK3-202ENST00000395066 CLEC4GQ6UXB4 293 aa23.18■■□□□ 1.3
CLK3-202ENST00000395066 DTHD1Q6ZMT9 781 aa23.18■■□□□ 1.3
CLK3-202ENST00000395066 ADSSL1Q8N142 457 aa23.18■■□□□ 1.3
CLK3-202ENST00000395066 ANKRD20A12PQ8NF67 263 aa23.18■■□□□ 1.3
CLK3-202ENST00000395066 SH3RF3Q8TEJ3 882 aaPredicted RBP23.18■■□□□ 1.3
CLK3-202ENST00000395066 GPR101Q96P66 508 aaPredicted RBP23.18■■□□□ 1.3
CLK3-202ENST00000395066 TUBB2BQ9BVA1 445 aa23.18■■□□□ 1.3
CLK3-202ENST00000395066 PDE11AQ9HCR9 933 aa23.18■■□□□ 1.3
CLK3-202ENST00000395066 CWC15Q9P013 229 aaKnown RBP23.18■■□□□ 1.3
CLK3-202ENST00000395066 PCDHA6Q9UN73 950 aa23.18■■□□□ 1.3
CLK3-202ENST00000395066 PCDHA8Q9Y5H6 950 aa23.18■■□□□ 1.3
CLK3-202ENST00000395066 NKRFO15226 690 aaKnown RBP eCLIP23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms