RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 PARP14Q460N5 1801 aa16.93■□□□□ 0.3
PTCH1-202ENST00000375271 TLR3O15455 904 aaKnown RBP16.92■□□□□ 0.3
PTCH1-202ENST00000375271 ZBED4O75132 1171 aa16.92■□□□□ 0.3
PTCH1-202ENST00000375271 C6orf222P0C671 652 aaPredicted RBP16.92■□□□□ 0.3
PTCH1-202ENST00000375271 TAL1P17542 331 aaPredicted RBP16.92■□□□□ 0.3
PTCH1-202ENST00000375271 IL27Q8NEV9 243 aa16.92■□□□□ 0.3
PTCH1-202ENST00000375271 LENG1Q96BZ8 264 aaPredicted RBP16.92■□□□□ 0.3
PTCH1-202ENST00000375271 TIFAQ96CG3 184 aa16.92■□□□□ 0.3
PTCH1-202ENST00000375271 ZNF287Q9HBT7 754 aa16.92■□□□□ 0.3
PTCH1-202ENST00000375271 SMCHD1A6NHR9 2005 aa16.92■□□□□ 0.3
PTCH1-202ENST00000375271 ZBED9Q6R2W3 1325 aa16.92■□□□□ 0.3
PTCH1-202ENST00000375271 SYNGAP1Q96PV0 1343 aa16.92■□□□□ 0.3
PTCH1-202ENST00000375271 SYNRGQ9UMZ2 1314 aa16.92■□□□□ 0.3
PTCH1-202ENST00000375271 ZNF865P0CJ78 1059 aaPredicted RBP16.91■□□□□ 0.3
PTCH1-202ENST00000375271 UBE3CQ15386 1083 aa16.91■□□□□ 0.3
PTCH1-202ENST00000375271 ANKRD33Q7Z3H0 272 aa16.91■□□□□ 0.3
PTCH1-202ENST00000375271 SIAH1Q8IUQ4 282 aa16.91■□□□□ 0.3
PTCH1-202ENST00000375271 CPXCR1Q8N123 301 aa16.91■□□□□ 0.3
PTCH1-202ENST00000375271 ANKRD35Q8N283 1001 aa16.91■□□□□ 0.3
PTCH1-202ENST00000375271 TMEM199Q8N511 208 aa16.91■□□□□ 0.3
PTCH1-202ENST00000375271 MTIF3Q9H2K0 278 aaKnown RBP16.91■□□□□ 0.3
PTCH1-202ENST00000375271 ZNF214Q9UL59 606 aaPredicted RBP16.91■□□□□ 0.3
PTCH1-202ENST00000375271 DDX19BQ9UMR2 479 aa16.91■□□□□ 0.3
PTCH1-202ENST00000375271 ADAMTS5Q9UNA0 930 aa16.91■□□□□ 0.3
PTCH1-202ENST00000375271 VCANP13611 3396 aa16.9■□□□□ 0.3
PTCH1-202ENST00000375271 ADAMTS4O75173 837 aa16.9■□□□□ 0.3
PTCH1-202ENST00000375271 DUSP11O75319 330 aaKnown RBP16.9■□□□□ 0.3
PTCH1-202ENST00000375271 TIMP1P01033 207 aa16.9■□□□□ 0.3
PTCH1-202ENST00000375271 ATP5JP18859 108 aa16.9■□□□□ 0.3
PTCH1-202ENST00000375271 ITGB8P26012 769 aa16.9■□□□□ 0.3
PTCH1-202ENST00000375271 FAAP100Q0VG06 881 aa16.9■□□□□ 0.3
PTCH1-202ENST00000375271 KCNA10Q16322 511 aa16.9■□□□□ 0.3
PTCH1-202ENST00000375271 TJAP1Q5JTD0 557 aa16.9■□□□□ 0.3
PTCH1-202ENST00000375271 NOL8Q76FK4 1167 aaKnown RBP16.9■□□□□ 0.3
PTCH1-202ENST00000375271 STK11IPQ8N1F8 1099 aa16.9■□□□□ 0.3
PTCH1-202ENST00000375271 PRPF38AQ8NAV1 312 aaKnown RBP16.9■□□□□ 0.3
PTCH1-202ENST00000375271 HAUS7Q99871 368 aa16.9■□□□□ 0.3
PTCH1-202ENST00000375271 ZNF576Q9H609 170 aa16.9■□□□□ 0.3
PTCH1-202ENST00000375271 PRDM6Q9NQX0 595 aa16.9■□□□□ 0.3
PTCH1-202ENST00000375271 FBXO40Q9UH90 709 aa16.9■□□□□ 0.3
PTCH1-202ENST00000375271 MYH7P12883 1935 aa16.9■□□□□ 0.3
PTCH1-202ENST00000375271 MINDY4BA8MYZ0 360 aa16.89■□□□□ 0.29
PTCH1-202ENST00000375271 EPHB4P54760 987 aa16.89■□□□□ 0.29
PTCH1-202ENST00000375271 PPM1EQ8WY54 764 aa16.89■□□□□ 0.29
PTCH1-202ENST00000375271 KIFC2Q96AC6 838 aa16.89■□□□□ 0.29
PTCH1-202ENST00000375271 NUP88Q99567 741 aaPredicted RBP16.89■□□□□ 0.29
PTCH1-202ENST00000375271 ELP1O95163 1332 aa16.89■□□□□ 0.29
PTCH1-202ENST00000375271 CDH23Q9H251 3354 aa16.88■□□□□ 0.29
PTCH1-202ENST00000375271 A0A0U1RQG5 324 aaPredicted RBP16.88■□□□□ 0.29
PTCH1-202ENST00000375271 IKQ13123 557 aaPredicted RBP16.88■□□□□ 0.29
PTCH1-202ENST00000375271 ACVR2BQ13705 512 aa16.88■□□□□ 0.29
PTCH1-202ENST00000375271 GRIN2CQ14957 1233 aa16.88■□□□□ 0.29
PTCH1-202ENST00000375271 SLFNL1Q499Z3 407 aa16.88■□□□□ 0.29
PTCH1-202ENST00000375271 GNASQ5JWF2 1037 aa16.88■□□□□ 0.29
PTCH1-202ENST00000375271 MFSD5Q6N075 450 aa16.88■□□□□ 0.29
PTCH1-202ENST00000375271 CTR9Q6PD62 1173 aa16.88■□□□□ 0.29
PTCH1-202ENST00000375271 PSRC1Q6PGN9 363 aaPredicted RBP16.88■□□□□ 0.29
PTCH1-202ENST00000375271 GPATCH3Q96I76 525 aa16.88■□□□□ 0.29
PTCH1-202ENST00000375271 ABHD16BQ9H3Z7 469 aa16.88■□□□□ 0.29
PTCH1-202ENST00000375271 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.88■□□□□ 0.29
PTCH1-202ENST00000375271 MSRAQ9UJ68 235 aa16.88■□□□□ 0.29
PTCH1-202ENST00000375271 PRUNE2Q8WUY3 3088 aa16.88■□□□□ 0.29
PTCH1-202ENST00000375271 F5H6K3 240 aa16.87■□□□□ 0.29
PTCH1-202ENST00000375271 ASGR1P07306 291 aa16.87■□□□□ 0.29
PTCH1-202ENST00000375271 TDO2P48775 406 aa16.87■□□□□ 0.29
PTCH1-202ENST00000375271 KLRC3Q07444 240 aa16.87■□□□□ 0.29
PTCH1-202ENST00000375271 ZNF467Q7Z7K2 595 aaPredicted RBP16.87■□□□□ 0.29
PTCH1-202ENST00000375271 ZNF444Q8N0Y2 327 aaPredicted RBP16.87■□□□□ 0.29
PTCH1-202ENST00000375271 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.87■□□□□ 0.29
PTCH1-202ENST00000375271 PPP1R12CQ9BZL4 782 aa16.87■□□□□ 0.29
PTCH1-202ENST00000375271 NYAP2Q9P242 653 aa16.87■□□□□ 0.29
PTCH1-202ENST00000375271 NDUFB10O96000 172 aa16.86■□□□□ 0.29
PTCH1-202ENST00000375271 APPP05067 770 aa16.86■□□□□ 0.29
PTCH1-202ENST00000375271 RAB30Q15771 203 aa16.86■□□□□ 0.29
PTCH1-202ENST00000375271 MAMDC4Q6UXC1 1216 aa16.86■□□□□ 0.29
PTCH1-202ENST00000375271 REPS2Q8NFH8 660 aa16.86■□□□□ 0.29
PTCH1-202ENST00000375271 RAVER2Q9HCJ3 691 aaKnown RBP16.86■□□□□ 0.29
PTCH1-202ENST00000375271 CLIP2Q9UDT6 1046 aa16.86■□□□□ 0.29
PTCH1-202ENST00000375271 FEM1BQ9UK73 627 aa16.86■□□□□ 0.29
PTCH1-202ENST00000375271 ARVCFO00192 962 aa16.85■□□□□ 0.29
PTCH1-202ENST00000375271 TNFRSF10AO00220 468 aa16.85■□□□□ 0.29
PTCH1-202ENST00000375271 ZEB2O60315 1214 aa16.85■□□□□ 0.29
PTCH1-202ENST00000375271 SNAI1O95863 264 aaPredicted RBP16.85■□□□□ 0.29
PTCH1-202ENST00000375271 CST5P28325 142 aaPredicted RBP16.85■□□□□ 0.29
PTCH1-202ENST00000375271 LRRFIP1Q32MZ4 808 aaKnown RBP16.85■□□□□ 0.29
PTCH1-202ENST00000375271 CCDC144BQ3MJ40 725 aa16.85■□□□□ 0.29
PTCH1-202ENST00000375271 KLHDC9Q8NEP7 349 aa16.85■□□□□ 0.29
PTCH1-202ENST00000375271 CHST13Q8NET6 341 aa16.85■□□□□ 0.29
PTCH1-202ENST00000375271 LRRCC1Q9C099 1032 aa16.85■□□□□ 0.29
PTCH1-202ENST00000375271 PUS7LQ9H0K6 701 aaKnown RBP16.85■□□□□ 0.29
PTCH1-202ENST00000375271 TSPYL2Q9H2G4 693 aaPredicted RBP16.85■□□□□ 0.29
PTCH1-202ENST00000375271 HOMER2Q9NSB8 354 aa16.85■□□□□ 0.29
PTCH1-202ENST00000375271 TBX21Q9UL17 535 aa16.85■□□□□ 0.29
PTCH1-202ENST00000375271 COG6Q9Y2V7 657 aa16.85■□□□□ 0.29
PTCH1-202ENST00000375271 SMIM22K7EJ46 135 aa16.84■□□□□ 0.29
PTCH1-202ENST00000375271 SLC3A2P08195 630 aaKnown RBP16.84■□□□□ 0.29
PTCH1-202ENST00000375271 CSF2RAP15509 400 aa16.84■□□□□ 0.29
PTCH1-202ENST00000375271 IGFBP4P22692 258 aa16.84■□□□□ 0.29
PTCH1-202ENST00000375271 GIMAP6Q6P9H5 292 aa16.84■□□□□ 0.29
PTCH1-202ENST00000375271 ARMCX2Q7L311 632 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms