RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 NBPF26B4DH59 902 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 MECOMQ03112 1051 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 TRIM28Q13263 835 aaKnown RBP12.87□□□□□ -0.35
SYNE1-204ENST00000367248 NBPF10Q6P3W6 841 aaKnown RBP12.87□□□□□ -0.35
SYNE1-204ENST00000367248 MAATS1Q7Z4T9 603 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 NBPF15Q8N660 670 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 ZBED2Q9BTP6 218 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 SPATA31A6Q5VVP1 1343 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 NR1I2O75469 434 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 TNNI1P19237 187 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 PPP2R5DQ14738 602 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 HACE1Q8IYU2 909 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 LMBRD1Q9NUN5 540 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 KARSQ15046 597 aaKnown RBP12.87□□□□□ -0.35
SYNE1-204ENST00000367248 KRT26Q7Z3Y9 468 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 FOXP4Q8IVH2 680 aaPredicted RBP12.87□□□□□ -0.35
SYNE1-204ENST00000367248 BAG1Q99933 345 aaPredicted RBP12.87□□□□□ -0.35
SYNE1-204ENST00000367248 LRFN2Q9ULH4 789 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 SCAF8Q9UPN6 1271 aaKnown RBP12.87□□□□□ -0.35
SYNE1-204ENST00000367248 FAM196BA6NMK8 535 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 LRMPQ12912 555 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 BMS1Q14692 1282 aaKnown RBP12.87□□□□□ -0.35
SYNE1-204ENST00000367248 OTUD6AQ7L8S5 288 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 MED10Q9BTT4 135 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 SRRTQ9BXP5 876 aaKnown RBP12.87□□□□□ -0.35
SYNE1-204ENST00000367248 PI4KBQ9UBF8 816 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 SCRN1Q12765 414 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 DDX12PQ92771 950 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 UNC13BO14795 1591 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 TNFAIP3P21580 790 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 PODNQ7Z5L7 613 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 TICAM2Q86XR7 235 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 IWS1Q96ST2 819 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 TDRD3Q9H7E2 651 aaKnown RBP12.87□□□□□ -0.35
SYNE1-204ENST00000367248 TAB2Q9NYJ8 693 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 AKT3Q9Y243 479 aa12.87□□□□□ -0.35
SYNE1-204ENST00000367248 CTAGE9A4FU28 777 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 MCAMP43121 646 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 ARPP19P56211 112 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 KMT5BQ4FZB7 885 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 KIFAP3Q92845 792 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 MAK16Q9BXY0 300 aaKnown RBP12.86□□□□□ -0.35
SYNE1-204ENST00000367248 MINPP1Q9UNW1 487 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 HS1BP3Q53T59 392 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 CCDC122Q5T0U0 273 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.86□□□□□ -0.35
SYNE1-204ENST00000367248 PI4K2BQ8TCG2 481 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 RBSNQ9H1K0 784 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 RASAL2Q9UJF2 1139 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 CMA1P23946 247 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 YARSP54577 528 aaKnown RBP12.86□□□□□ -0.35
SYNE1-204ENST00000367248 MAP2K1Q02750 393 aaPredicted RBP12.86□□□□□ -0.35
SYNE1-204ENST00000367248 GPBP1Q86WP2 473 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 DYNLL2Q96FJ2 89 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 MMS19Q96T76 1030 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 CARMIL3Q8ND23 1372 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 SLFN12Q8IYM2 578 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 PPP1R14CQ8TAE6 165 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 CYP4A11Q02928 519 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 GABPAQ06546 454 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 SERPINA10Q9UK55 444 aa12.86□□□□□ -0.35
SYNE1-204ENST00000367248 TECP42680 631 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 BBXQ8WY36 941 aaPredicted RBP12.85□□□□□ -0.35
SYNE1-204ENST00000367248 STRBPQ96SI9 672 aaKnown RBP12.85□□□□□ -0.35
SYNE1-204ENST00000367248 CBX8Q9HC52 389 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 PTPRUQ92729 1446 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 NT5C2P49902 561 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 TMED8Q6PL24 325 aaPredicted RBP12.85□□□□□ -0.35
SYNE1-204ENST00000367248 CCDC84Q86UT8 332 aaPredicted RBP12.85□□□□□ -0.35
SYNE1-204ENST00000367248 ST7Q9NRC1 585 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 SHTN1A0MZ66 631 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 LRRIQ4A6NIV6 560 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 BMP3P12645 472 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 ZNF569Q5MCW4 686 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 PGBD1Q96JS3 809 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 NOX5Q96PH1 765 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 WRNIP1Q96S55 665 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 TEKT3Q9BXF9 490 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 ZNF341Q9BYN7 854 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 NFIXQ14938 502 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 OTUD5Q96G74 571 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 ADAMTS13Q76LX8 1427 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 CYP2D7A0A087X1C5 515 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 hCG_1984214I3L0E3 225 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 ECE2O60344 883 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 RNASELQ05823 741 aaKnown RBP12.85□□□□□ -0.35
SYNE1-204ENST00000367248 ZNF713Q8N859 430 aaPredicted RBP12.85□□□□□ -0.35
SYNE1-204ENST00000367248 NSUN7Q8NE18 718 aaKnown RBP12.85□□□□□ -0.35
SYNE1-204ENST00000367248 NELFBQ8WX92 580 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 ZFP91Q96JP5 570 aaPredicted RBP12.85□□□□□ -0.35
SYNE1-204ENST00000367248 BRIP1Q9BX63 1249 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 LARSQ9P2J5 1176 aaKnown RBP12.85□□□□□ -0.35
SYNE1-204ENST00000367248 ARHGEF40Q8TER5 1519 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 RPAP1Q9BWH6 1393 aaPredicted RBP12.85□□□□□ -0.35
SYNE1-204ENST00000367248 IFNAR1P17181 557 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 TRAPPC10P48553 1259 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 CEP112Q8N8E3 955 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 CD209Q9NNX6 404 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 ANKFY1Q9P2R3 1169 aa12.85□□□□□ -0.35
SYNE1-204ENST00000367248 PCDHB13Q9Y5F0 798 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms