RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 UBE2Q2LH0YL09 131 aa8.71□□□□□ -1.02
VPS13A-201ENST00000355766 RGS9O75916 674 aaPredicted RBP8.71□□□□□ -1.02
VPS13A-201ENST00000355766 ELNP15502 786 aa8.71□□□□□ -1.02
VPS13A-201ENST00000355766 EPB42P16452 691 aa8.71□□□□□ -1.02
VPS13A-201ENST00000355766 GPSM2P81274 684 aa8.71□□□□□ -1.02
VPS13A-201ENST00000355766 TWISTNBQ3B726 338 aaPredicted RBP8.71□□□□□ -1.02
VPS13A-201ENST00000355766 HSP90AB3PQ58FF7 597 aa8.71□□□□□ -1.02
VPS13A-201ENST00000355766 CELF1Q92879 486 aaKnown RBP8.71□□□□□ -1.02
VPS13A-201ENST00000355766 R3HDMLQ9H3Y0 253 aa8.71□□□□□ -1.02
VPS13A-201ENST00000355766 SMC4Q9NTJ3 1288 aa8.71□□□□□ -1.02
VPS13A-201ENST00000355766 ZFATQ9P243 1243 aa8.71□□□□□ -1.02
VPS13A-201ENST00000355766 TRMT112Q9UI30 125 aaKnown RBP8.71□□□□□ -1.02
VPS13A-201ENST00000355766 C9orf172C9J069 976 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 DLL1O00548 723 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 VAMP4O75379 141 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 MICAL2O94851 1124 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 MAP3K6O95382 1288 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 RAC1P63000 192 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 ADGRE1Q14246 886 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 ATF7IPQ6VMQ6 1270 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 KRT25Q7Z3Z0 450 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 FAM35AQ86V20 835 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 DMRTC2Q8IXT2 367 aaPredicted RBP8.7□□□□□ -1.02
VPS13A-201ENST00000355766 AGBL3Q8NEM8 1001 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 TBC1D16Q8TBP0 767 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 SSH1Q8WYL5 1049 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 ARMC5Q96C12 935 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 CCDC136Q96JN2 1154 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 THUMPD2Q9BTF0 503 aaKnown RBP8.7□□□□□ -1.02
VPS13A-201ENST00000355766 MYOZ2Q9NPC6 264 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 PTPRCP08575 1304 aa8.7□□□□□ -1.02
VPS13A-201ENST00000355766 SZT2Q5T011 3432 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 ZBTB42B2RXF5 422 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 DYRK3O43781 588 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 BCAR3O75815 825 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 CPB1P15086 417 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 EN2P19622 333 aaPredicted RBP8.69□□□□□ -1.02
VPS13A-201ENST00000355766 TARSP26639 723 aaKnown RBP8.69□□□□□ -1.02
VPS13A-201ENST00000355766 NF2P35240 595 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 ARSDP51689 593 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 TCIRG1Q13488 830 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 MBTPS1Q14703 1052 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 PROSER3Q2NL68 480 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 C11orf91Q3C1V1 193 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 ZMYM1Q5SVZ6 1142 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 SHISA2Q6UWI4 295 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 FAM200AQ8TCP9 573 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 VTI1AQ96AJ9 217 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 IFT43Q96FT9 208 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 MYO19Q96H55 970 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 API5Q9BZZ5 524 aaKnown RBP8.69□□□□□ -1.02
VPS13A-201ENST00000355766 DDX19BQ9UMR2 479 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 PTPN22Q9Y2R2 807 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 SCN9AQ15858 1988 aa8.69□□□□□ -1.02
VPS13A-201ENST00000355766 OPLAHO14841 1288 aa8.68□□□□□ -1.02
VPS13A-201ENST00000355766 SASH3O75995 380 aa8.68□□□□□ -1.02
VPS13A-201ENST00000355766 MVPQ14764 893 aaKnown RBP8.68□□□□□ -1.02
VPS13A-201ENST00000355766 SF3B3Q15393 1217 aaKnown RBP8.68□□□□□ -1.02
VPS13A-201ENST00000355766 PRAMEF18Q5VWM3 479 aa8.68□□□□□ -1.02
VPS13A-201ENST00000355766 DHX32Q7L7V1 743 aaKnown RBP8.68□□□□□ -1.02
VPS13A-201ENST00000355766 FTSJ3Q8IY81 847 aaKnown RBP8.68□□□□□ -1.02
VPS13A-201ENST00000355766 DZIP1LQ8IYY4 767 aaKnown RBP8.68□□□□□ -1.02
VPS13A-201ENST00000355766 FMR1NBQ8N0W7 255 aaPredicted RBP8.68□□□□□ -1.02
VPS13A-201ENST00000355766 LENG1Q96BZ8 264 aaPredicted RBP8.68□□□□□ -1.02
VPS13A-201ENST00000355766 ERO1AQ96HE7 468 aa8.68□□□□□ -1.02
VPS13A-201ENST00000355766 GMLQ99445 158 aa8.68□□□□□ -1.02
VPS13A-201ENST00000355766 LPIN3Q9BQK8 851 aa8.68□□□□□ -1.02
VPS13A-201ENST00000355766 ZC3H12CQ9C0D7 883 aaKnown RBP8.68□□□□□ -1.02
VPS13A-201ENST00000355766 PODXL2Q9NZ53 605 aa8.68□□□□□ -1.02
VPS13A-201ENST00000355766 TSPYL4Q9UJ04 414 aa8.68□□□□□ -1.02
VPS13A-201ENST00000355766 LRFN2Q9ULH4 789 aa8.68□□□□□ -1.02
VPS13A-201ENST00000355766 SCAF8Q9UPN6 1271 aaKnown RBP8.68□□□□□ -1.02
VPS13A-201ENST00000355766 MANSC4A6NHS7 340 aaPredicted RBP8.67□□□□□ -1.02
VPS13A-201ENST00000355766 UFL1O94874 794 aa8.67□□□□□ -1.02
VPS13A-201ENST00000355766 ANXA1P04083 346 aa8.67□□□□□ -1.02
VPS13A-201ENST00000355766 TRIM27P14373 513 aa8.67□□□□□ -1.02
VPS13A-201ENST00000355766 CENPFP49454 3210 aa8.67□□□□□ -1.02
VPS13A-201ENST00000355766 IRX6P78412 446 aaPredicted RBP8.67□□□□□ -1.02
VPS13A-201ENST00000355766 PLAURQ03405 335 aa8.67□□□□□ -1.02
VPS13A-201ENST00000355766 PTPN12Q05209 780 aaKnown RBP8.67□□□□□ -1.02
VPS13A-201ENST00000355766 PSME4Q14997 1843 aa8.67□□□□□ -1.02
VPS13A-201ENST00000355766 PCSK7Q16549 785 aa8.67□□□□□ -1.02
VPS13A-201ENST00000355766 FOXD4L6Q3SYB3 417 aaPredicted RBP8.67□□□□□ -1.02
VPS13A-201ENST00000355766 PERM1Q5SV97 790 aa8.67□□□□□ -1.02
VPS13A-201ENST00000355766 FOXD4L3Q6VB84 417 aaPredicted RBP8.67□□□□□ -1.02
VPS13A-201ENST00000355766 CENPQQ7L2Z9 268 aaPredicted RBP8.67□□□□□ -1.02
VPS13A-201ENST00000355766 ARMC9Q7Z3E5 817 aa8.67□□□□□ -1.02
VPS13A-201ENST00000355766 EXOC6Q8TAG9 804 aa8.67□□□□□ -1.02
VPS13A-201ENST00000355766 ZNF333Q96JL9 665 aa8.67□□□□□ -1.02
VPS13A-201ENST00000355766 CRBNQ96SW2 442 aa8.67□□□□□ -1.02
VPS13A-201ENST00000355766 USP20Q9Y2K6 914 aa8.67□□□□□ -1.02
VPS13A-201ENST00000355766 TAF1P21675 1872 aa8.66□□□□□ -1.02
VPS13A-201ENST00000355766 LAMB1P07942 1786 aa8.66□□□□□ -1.02
VPS13A-201ENST00000355766 COL1A1P02452 1464 aaPredicted RBP8.66□□□□□ -1.02
VPS13A-201ENST00000355766 H0YGN5 161 aa8.66□□□□□ -1.02
VPS13A-201ENST00000355766 IGF2BP3O00425 579 aaKnown RBP eCLIP8.66□□□□□ -1.02
VPS13A-201ENST00000355766 PLIN1O60240 522 aa8.66□□□□□ -1.02
VPS13A-201ENST00000355766 RFX1P22670 979 aa8.66□□□□□ -1.02
VPS13A-201ENST00000355766 GRIK5Q16478 980 aa8.66□□□□□ -1.02
VPS13A-201ENST00000355766 NBPF9Q3BBW0 867 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms