RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 CCDC178Q5BJE1 867 aa21.93■■□□□ 1.1
COL9A3-201ENST00000343916 REXO1L1PQ8IX06 675 aa21.93■■□□□ 1.1
COL9A3-201ENST00000343916 UBR3Q6ZT12 1888 aa21.93■■□□□ 1.1
COL9A3-201ENST00000343916 ARHGAP6O43182 974 aa21.92■■□□□ 1.1
COL9A3-201ENST00000343916 DNAI1Q9UI46 699 aa21.92■■□□□ 1.1
COL9A3-201ENST00000343916 MAPK8IP1Q9UQF2 711 aa21.92■■□□□ 1.1
COL9A3-201ENST00000343916 FANCGO15287 622 aa21.92■■□□□ 1.1
COL9A3-201ENST00000343916 LONP1P36776 959 aaKnown RBP21.92■■□□□ 1.1
COL9A3-201ENST00000343916 RRAGBQ5VZM2 374 aa21.92■■□□□ 1.1
COL9A3-201ENST00000343916 FAM177A1Q8N128 213 aaPredicted RBP21.92■■□□□ 1.1
COL9A3-201ENST00000343916 CEP95Q96GE4 821 aa21.92■■□□□ 1.1
COL9A3-201ENST00000343916 PLIN2Q99541 437 aa21.92■■□□□ 1.1
COL9A3-201ENST00000343916 DDX60LQ5H9U9 1706 aaKnown RBP21.92■■□□□ 1.1
COL9A3-201ENST00000343916 IGSF3O75054 1194 aa21.91■■□□□ 1.1
COL9A3-201ENST00000343916 UTP14CQ5TAP6 766 aaKnown RBP21.91■■□□□ 1.1
COL9A3-201ENST00000343916 CDKAL1Q5VV42 579 aa21.91■■□□□ 1.1
COL9A3-201ENST00000343916 TRIM65Q6PJ69 517 aa21.91■■□□□ 1.1
COL9A3-201ENST00000343916 LRRN4CLQ8ND94 238 aa21.91■■□□□ 1.1
COL9A3-201ENST00000343916 CCDC148Q8NFR7 591 aa21.91■■□□□ 1.1
COL9A3-201ENST00000343916 ZNF287Q9HBT7 754 aa21.91■■□□□ 1.1
COL9A3-201ENST00000343916 RIMBP2O15034 1052 aa21.91■■□□□ 1.1
COL9A3-201ENST00000343916 STAT6P42226 847 aa21.91■■□□□ 1.1
COL9A3-201ENST00000343916 ETF1P62495 437 aaKnown RBP21.91■■□□□ 1.1
COL9A3-201ENST00000343916 TOGARAM2Q6ZUX3 1019 aa21.91■■□□□ 1.1
COL9A3-201ENST00000343916 VAT1LQ9HCJ6 419 aa21.91■■□□□ 1.1
COL9A3-201ENST00000343916 PPP2R2CQ9Y2T4 447 aa21.91■■□□□ 1.1
COL9A3-201ENST00000343916 GTPBP6O43824 516 aaPredicted RBP21.9■■□□□ 1.1
COL9A3-201ENST00000343916 BBOX1O75936 387 aa21.9■■□□□ 1.1
COL9A3-201ENST00000343916 GTF2IP78347 998 aa21.9■■□□□ 1.1
COL9A3-201ENST00000343916 DTHD1Q6ZMT9 781 aa21.9■■□□□ 1.1
COL9A3-201ENST00000343916 CPLX3Q8WVH0 158 aa21.9■■□□□ 1.1
COL9A3-201ENST00000343916 ADD3Q9UEY8 706 aaKnown RBP21.9■■□□□ 1.1
COL9A3-201ENST00000343916 F8W031 263 aaPredicted RBP21.9■■□□□ 1.1
COL9A3-201ENST00000343916 SLU7O95391 586 aaKnown RBP21.9■■□□□ 1.1
COL9A3-201ENST00000343916 NT5C2P49902 561 aa21.9■■□□□ 1.1
COL9A3-201ENST00000343916 PICALMQ13492 652 aa21.9■■□□□ 1.1
COL9A3-201ENST00000343916 CT47A1Q5JQC4 288 aaPredicted RBP21.9■■□□□ 1.1
COL9A3-201ENST00000343916 RASSF8Q8NHQ8 419 aa21.9■■□□□ 1.1
COL9A3-201ENST00000343916 NEDD1Q8NHV4 660 aa21.9■■□□□ 1.1
COL9A3-201ENST00000343916 DISC1Q9NRI5 854 aa21.9■■□□□ 1.1
COL9A3-201ENST00000343916 GDAQ9Y2T3 454 aa21.9■■□□□ 1.1
COL9A3-201ENST00000343916 CCP110O43303 1012 aa21.89■■□□□ 1.1
COL9A3-201ENST00000343916 PARP1P09874 1014 aaKnown RBP21.89■■□□□ 1.1
COL9A3-201ENST00000343916 TXLNAP40222 546 aa21.89■■□□□ 1.1
COL9A3-201ENST00000343916 CCT6AP40227 531 aaKnown RBP21.89■■□□□ 1.1
COL9A3-201ENST00000343916 NAPAP54920 295 aa21.89■■□□□ 1.1
COL9A3-201ENST00000343916 ELF2Q15723 593 aa21.89■■□□□ 1.1
COL9A3-201ENST00000343916 NAALADL2Q58DX5 795 aa21.89■■□□□ 1.1
COL9A3-201ENST00000343916 L2HGDHQ9H9P8 463 aa21.89■■□□□ 1.1
COL9A3-201ENST00000343916 PODXL2Q9NZ53 605 aa21.89■■□□□ 1.1
COL9A3-201ENST00000343916 POLRMTO00411 1230 aaKnown RBP21.89■■□□□ 1.09
COL9A3-201ENST00000343916 STX10O60499 249 aa21.89■■□□□ 1.09
COL9A3-201ENST00000343916 CREBRFQ8IUR6 639 aa21.89■■□□□ 1.09
COL9A3-201ENST00000343916 DAGLBQ8NCG7 672 aa21.89■■□□□ 1.09
COL9A3-201ENST00000343916 DESI2Q9BSY9 194 aa21.89■■□□□ 1.09
COL9A3-201ENST00000343916 TRIM37O94972 964 aa21.88■■□□□ 1.09
COL9A3-201ENST00000343916 RPN1P04843 607 aaKnown RBP21.88■■□□□ 1.09
COL9A3-201ENST00000343916 PLCG2P16885 1265 aa21.88■■□□□ 1.09
COL9A3-201ENST00000343916 MTF1Q14872 753 aa21.88■■□□□ 1.09
COL9A3-201ENST00000343916 IGSF22Q8N9C0 903 aa21.88■■□□□ 1.09
COL9A3-201ENST00000343916 ERO1AQ96HE7 468 aa21.88■■□□□ 1.09
COL9A3-201ENST00000343916 UBA5Q9GZZ9 404 aa21.88■■□□□ 1.09
COL9A3-201ENST00000343916 DAGLAQ9Y4D2 1042 aa21.88■■□□□ 1.09
COL9A3-201ENST00000343916 RBL2Q08999 1139 aa21.88■■□□□ 1.09
COL9A3-201ENST00000343916 CERS3Q8IU89 383 aa21.88■■□□□ 1.09
COL9A3-201ENST00000343916 PYM1Q9BRP8 204 aaKnown RBP21.88■■□□□ 1.09
COL9A3-201ENST00000343916 SPZ1Q9BXG8 430 aa21.88■■□□□ 1.09
COL9A3-201ENST00000343916 GAKO14976 1311 aa21.88■■□□□ 1.09
COL9A3-201ENST00000343916 HOXA10P31260 410 aaPredicted RBP21.87■■□□□ 1.09
COL9A3-201ENST00000343916 KRT27Q7Z3Y8 459 aa21.87■■□□□ 1.09
COL9A3-201ENST00000343916 FCHSD1Q86WN1 690 aa21.87■■□□□ 1.09
COL9A3-201ENST00000343916 FAM163AQ96GL9 167 aaPredicted RBP21.87■■□□□ 1.09
COL9A3-201ENST00000343916 ZMYND12Q9H0C1 365 aa21.87■■□□□ 1.09
COL9A3-201ENST00000343916 BRWD3Q6RI45 1802 aa21.87■■□□□ 1.09
COL9A3-201ENST00000343916 USP17L5A8MUK1 530 aa21.87■■□□□ 1.09
COL9A3-201ENST00000343916 ZSCAN12O43309 604 aa21.87■■□□□ 1.09
COL9A3-201ENST00000343916 CCDC93Q567U6 631 aa21.87■■□□□ 1.09
COL9A3-201ENST00000343916 CLEC10AQ8IUN9 316 aa21.87■■□□□ 1.09
COL9A3-201ENST00000343916 PIGSQ96S52 555 aa21.87■■□□□ 1.09
COL9A3-201ENST00000343916 MYH1P12882 1939 aa21.87■■□□□ 1.09
COL9A3-201ENST00000343916 SMCO2A6NFE2 343 aa21.86■■□□□ 1.09
COL9A3-201ENST00000343916 SOWAHDA6NJG2 315 aa21.86■■□□□ 1.09
COL9A3-201ENST00000343916 AKR1B15C9JRZ8 316 aaPredicted RBP21.86■■□□□ 1.09
COL9A3-201ENST00000343916 PRCPP42785 496 aa21.86■■□□□ 1.09
COL9A3-201ENST00000343916 EIF6P56537 245 aaKnown RBP21.86■■□□□ 1.09
COL9A3-201ENST00000343916 PAK1Q13153 545 aa21.86■■□□□ 1.09
COL9A3-201ENST00000343916 LETM2Q2VYF4 491 aa21.86■■□□□ 1.09
COL9A3-201ENST00000343916 ZNF658Q5TYW1 1059 aaPredicted RBP21.86■■□□□ 1.09
COL9A3-201ENST00000343916 GALNT17Q6IS24 598 aa21.86■■□□□ 1.09
COL9A3-201ENST00000343916 LRRC15Q8TF66 581 aa21.86■■□□□ 1.09
COL9A3-201ENST00000343916 TBC1D22AQ8WUA7 517 aa21.86■■□□□ 1.09
COL9A3-201ENST00000343916 NELFBQ8WX92 580 aa21.86■■□□□ 1.09
COL9A3-201ENST00000343916 LZTS2Q9BRK4 669 aa21.86■■□□□ 1.09
COL9A3-201ENST00000343916 MXD3Q9BW11 206 aa21.86■■□□□ 1.09
COL9A3-201ENST00000343916 FRMPD2Q68DX3 1309 aaPredicted RBP21.86■■□□□ 1.09
COL9A3-201ENST00000343916 PBX1P40424 430 aa21.86■■□□□ 1.09
COL9A3-201ENST00000343916 UBA7P41226 1012 aa21.86■■□□□ 1.09
COL9A3-201ENST00000343916 CCNT1O60563 726 aaKnown RBP21.85■■□□□ 1.09
COL9A3-201ENST00000343916 KRT31Q15323 416 aa21.85■■□□□ 1.09
COL9A3-201ENST00000343916 RRP36Q96EU6 259 aaKnown RBP21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms