RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 GNRH1P01148 92 aa18.59■□□□□ 0.57
CCDC28A-201ENST00000332797 GOLGA8HP0CJ92 632 aa18.59■□□□□ 0.57
CCDC28A-201ENST00000332797 MAPK4P31152 587 aa18.59■□□□□ 0.57
CCDC28A-201ENST00000332797 SLC16A2P36021 539 aa18.59■□□□□ 0.57
CCDC28A-201ENST00000332797 WDR78Q5VTH9 848 aa18.59■□□□□ 0.57
CCDC28A-201ENST00000332797 REPS2Q8NFH8 660 aa18.59■□□□□ 0.57
CCDC28A-201ENST00000332797 TCEANC2Q96MN5 208 aa18.59■□□□□ 0.57
CCDC28A-201ENST00000332797 MOV10L1Q9BXT6 1211 aaKnown RBP18.59■□□□□ 0.57
CCDC28A-201ENST00000332797 SEC24BO95487 1268 aa18.58■□□□□ 0.57
CCDC28A-201ENST00000332797 HMGB1P09429 215 aaKnown RBP18.58■□□□□ 0.57
CCDC28A-201ENST00000332797 CPA1P15085 419 aa18.58■□□□□ 0.57
CCDC28A-201ENST00000332797 HOXD10P28358 340 aa18.58■□□□□ 0.57
CCDC28A-201ENST00000332797 GPATCH4Q5T3I0 446 aaKnown RBP18.58■□□□□ 0.57
CCDC28A-201ENST00000332797 SYDE2Q5VT97 1194 aa18.58■□□□□ 0.57
CCDC28A-201ENST00000332797 NFXL1Q6ZNB6 911 aa18.58■□□□□ 0.57
CCDC28A-201ENST00000332797 DHX32Q7L7V1 743 aaKnown RBP18.58■□□□□ 0.57
CCDC28A-201ENST00000332797 TNS4Q8IZW8 715 aa18.58■□□□□ 0.57
CCDC28A-201ENST00000332797 COA7Q96BR5 231 aa18.58■□□□□ 0.57
CCDC28A-201ENST00000332797 SLC38A10Q9HBR0 1119 aa18.58■□□□□ 0.57
CCDC28A-201ENST00000332797 SRRDQ9UH36 339 aa18.58■□□□□ 0.57
CCDC28A-201ENST00000332797 PRR12Q9ULL5 1215 aa18.58■□□□□ 0.57
CCDC28A-201ENST00000332797 WDR19Q8NEZ3 1342 aa18.58■□□□□ 0.57
CCDC28A-201ENST00000332797 PARP1P09874 1014 aaKnown RBP18.58■□□□□ 0.56
CCDC28A-201ENST00000332797 PRKCZQ05513 592 aa18.58■□□□□ 0.56
CCDC28A-201ENST00000332797 PKN2Q16513 984 aaKnown RBP18.58■□□□□ 0.56
CCDC28A-201ENST00000332797 ASPRV1Q53RT3 343 aa18.58■□□□□ 0.56
CCDC28A-201ENST00000332797 BTNL9Q6UXG8 535 aa18.58■□□□□ 0.56
CCDC28A-201ENST00000332797 CATIPQ7Z7H3 387 aa18.58■□□□□ 0.56
CCDC28A-201ENST00000332797 ZNF214Q9UL59 606 aaPredicted RBP18.58■□□□□ 0.56
CCDC28A-201ENST00000332797 PTPN22Q9Y2R2 807 aa18.58■□□□□ 0.56
CCDC28A-201ENST00000332797 CCDC69A6NI79 296 aa18.57■□□□□ 0.56
CCDC28A-201ENST00000332797 FDX1P10109 184 aa18.57■□□□□ 0.56
CCDC28A-201ENST00000332797 CASTP20810 708 aaKnown RBP18.57■□□□□ 0.56
CCDC28A-201ENST00000332797 PSMA5P28066 241 aa18.57■□□□□ 0.56
CCDC28A-201ENST00000332797 STAT3P40763 770 aa18.57■□□□□ 0.56
CCDC28A-201ENST00000332797 SNAP25P60880 206 aa18.57■□□□□ 0.56
CCDC28A-201ENST00000332797 EXOSC10Q01780 885 aaKnown RBP18.57■□□□□ 0.56
CCDC28A-201ENST00000332797 SNRNP48Q6IEG0 339 aaKnown RBP18.57■□□□□ 0.56
CCDC28A-201ENST00000332797 FBXO46Q6PJ61 603 aaPredicted RBP18.57■□□□□ 0.56
CCDC28A-201ENST00000332797 BLOC1S2Q6QNY1 142 aa18.57■□□□□ 0.56
CCDC28A-201ENST00000332797 GPR142Q7Z601 462 aa18.57■□□□□ 0.56
CCDC28A-201ENST00000332797 NCAPG2Q86XI2 1143 aa18.57■□□□□ 0.56
CCDC28A-201ENST00000332797 CPXCR1Q8N123 301 aa18.57■□□□□ 0.56
CCDC28A-201ENST00000332797 RAVER2Q9HCJ3 691 aaKnown RBP18.57■□□□□ 0.56
CCDC28A-201ENST00000332797 GABRQQ9UN88 632 aa18.57■□□□□ 0.56
CCDC28A-201ENST00000332797 PTCH2Q9Y6C5 1203 aa18.57■□□□□ 0.56
CCDC28A-201ENST00000332797 ERCC3P19447 782 aa18.56■□□□□ 0.56
CCDC28A-201ENST00000332797 LIFRP42702 1097 aa18.56■□□□□ 0.56
CCDC28A-201ENST00000332797 SLC4A3P48751 1232 aa18.56■□□□□ 0.56
CCDC28A-201ENST00000332797 PRMT2P55345 433 aa18.56■□□□□ 0.56
CCDC28A-201ENST00000332797 CCDC174Q6PII3 467 aa18.56■□□□□ 0.56
CCDC28A-201ENST00000332797 PLEKHH3Q7Z736 793 aa18.56■□□□□ 0.56
CCDC28A-201ENST00000332797 ZNF654Q8IZM8 581 aa18.56■□□□□ 0.56
CCDC28A-201ENST00000332797 TMTC2Q8N394 836 aa18.56■□□□□ 0.56
CCDC28A-201ENST00000332797 SHCBP1Q8NEM2 672 aa18.56■□□□□ 0.56
CCDC28A-201ENST00000332797 NUP133Q8WUM0 1156 aa18.56■□□□□ 0.56
CCDC28A-201ENST00000332797 MYL10Q9BUA6 226 aa18.56■□□□□ 0.56
CCDC28A-201ENST00000332797 TEX13BQ9BXU2 312 aa18.56■□□□□ 0.56
CCDC28A-201ENST00000332797 UBA5Q9GZZ9 404 aa18.56■□□□□ 0.56
CCDC28A-201ENST00000332797 CPVLQ9H3G5 476 aa18.56■□□□□ 0.56
CCDC28A-201ENST00000332797 SLC25A27O95847 323 aa18.55■□□□□ 0.56
CCDC28A-201ENST00000332797 FGD1P98174 961 aa18.55■□□□□ 0.56
CCDC28A-201ENST00000332797 GRM4Q14833 912 aa18.55■□□□□ 0.56
CCDC28A-201ENST00000332797 RIOX2Q8IUF8 465 aa18.55■□□□□ 0.56
CCDC28A-201ENST00000332797 RAET1EQ8TD07 263 aa18.55■□□□□ 0.56
CCDC28A-201ENST00000332797 MAD2L2Q9UI95 211 aa18.55■□□□□ 0.56
CCDC28A-201ENST00000332797 IVNS1ABPQ9Y6Y0 642 aa18.55■□□□□ 0.56
CCDC28A-201ENST00000332797 ATP2A1O14983 1001 aa18.54■□□□□ 0.56
CCDC28A-201ENST00000332797 DDAH1O94760 285 aa18.54■□□□□ 0.56
CCDC28A-201ENST00000332797 RPS6KB1P23443 525 aa18.54■□□□□ 0.56
CCDC28A-201ENST00000332797 FLT3LGP49771 235 aa18.54■□□□□ 0.56
CCDC28A-201ENST00000332797 OAZ1P54368 228 aa18.54■□□□□ 0.56
CCDC28A-201ENST00000332797 TROAPQ12815 778 aa18.54■□□□□ 0.56
CCDC28A-201ENST00000332797 STAG2Q8N3U4 1231 aa18.54■□□□□ 0.56
CCDC28A-201ENST00000332797 RANBP17Q9H2T7 1088 aaKnown RBP18.54■□□□□ 0.56
CCDC28A-201ENST00000332797 MROH8Q9H579 483 aa18.54■□□□□ 0.56
CCDC28A-201ENST00000332797 PLXNB2O15031 1838 aa18.53■□□□□ 0.56
CCDC28A-201ENST00000332797 DHX16O60231 1041 aaKnown RBP18.53■□□□□ 0.56
CCDC28A-201ENST00000332797 COPB2P35606 906 aa18.53■□□□□ 0.56
CCDC28A-201ENST00000332797 RAB11FIP4Q86YS3 637 aa18.53■□□□□ 0.56
CCDC28A-201ENST00000332797 SOCS4Q8WXH5 440 aa18.53■□□□□ 0.56
CCDC28A-201ENST00000332797 SLC12A7Q9Y666 1083 aa18.53■□□□□ 0.56
CCDC28A-201ENST00000332797 PALM3A6NDB9 673 aaPredicted RBP18.52■□□□□ 0.56
CCDC28A-201ENST00000332797 KLRF2D3W0D1 207 aa18.52■□□□□ 0.56
CCDC28A-201ENST00000332797 RXRAP19793 462 aa18.52■□□□□ 0.56
CCDC28A-201ENST00000332797 PTPREP23469 700 aa18.52■□□□□ 0.56
CCDC28A-201ENST00000332797 Q6ZUG5 572 aa18.52■□□□□ 0.56
CCDC28A-201ENST00000332797 RUFY3Q7L099 469 aa18.52■□□□□ 0.56
CCDC28A-201ENST00000332797 SGMS1Q86VZ5 419 aa18.52■□□□□ 0.56
CCDC28A-201ENST00000332797 CTCFLQ8NI51 663 aaPredicted RBP18.52■□□□□ 0.56
CCDC28A-201ENST00000332797 AGBL1Q96MI9 1066 aa18.52■□□□□ 0.56
CCDC28A-201ENST00000332797 NUDT12Q9BQG2 462 aa18.52■□□□□ 0.56
CCDC28A-201ENST00000332797 GJD2Q9UKL4 321 aa18.52■□□□□ 0.56
CCDC28A-201ENST00000332797 HPS5Q9UPZ3 1129 aa18.52■□□□□ 0.56
CCDC28A-201ENST00000332797 RIPK3Q9Y572 518 aa18.52■□□□□ 0.56
CCDC28A-201ENST00000332797 CYP46A1Q9Y6A2 500 aa18.52■□□□□ 0.56
CCDC28A-201ENST00000332797 ZNF536O15090 1300 aa18.52■□□□□ 0.56
CCDC28A-201ENST00000332797 HTTP42858 3142 aa18.52■□□□□ 0.56
CCDC28A-201ENST00000332797 SLC15A5A6NIM6 579 aa18.52■□□□□ 0.55
CCDC28A-201ENST00000332797 ANAPC15P60006 121 aa18.52■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms