RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 FLCNQ8NFG4 579 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 SUPT3HO75486 399 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 TXKP42681 527 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 CYP2J2P51589 502 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 MLKLQ8NB16 471 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 HDAC11Q96DB2 347 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 BAZ2BQ9UIF8 2168 aaKnown RBP9.56□□□□□ -0.88
USF3-201ENST00000316407 BACH1O14867 736 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 GFAPP14136 432 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 RHBDL2Q9NX52 303 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 NBPF20Q3BBV1 942 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 GNA11P29992 359 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 ANKRD13DQ6ZTN6 518 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 ETF1P62495 437 aaKnown RBP9.56□□□□□ -0.88
USF3-201ENST00000316407 VTI1AQ96AJ9 217 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 GPCPD1Q9NPB8 672 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 WBP4O75554 376 aaKnown RBP9.56□□□□□ -0.88
USF3-201ENST00000316407 MYO1EQ12965 1108 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 RAPGEF5Q92565 580 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 ST7Q9NRC1 585 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 MMEP08473 750 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 PARP1P09874 1014 aaKnown RBP9.56□□□□□ -0.88
USF3-201ENST00000316407 PLCD1P51178 756 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 LMNB2Q03252 620 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 CDC5LQ99459 802 aaKnown RBP9.56□□□□□ -0.88
USF3-201ENST00000316407 YWHAGP61981 247 aaKnown RBP eCLIP9.56□□□□□ -0.88
USF3-201ENST00000316407 KRT81Q14533 505 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 TAF12Q16514 161 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 MYCT1Q8N699 235 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 EPRSP07814 1512 aaKnown RBP9.56□□□□□ -0.88
USF3-201ENST00000316407 MAP3K7CLP57077 242 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 PDCLQ13371 301 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 ACRBPQ8NEB7 543 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 ANGPTL2Q9UKU9 493 aa9.56□□□□□ -0.88
USF3-201ENST00000316407 GSPT2Q8IYD1 628 aaKnown RBP9.55□□□□□ -0.88
USF3-201ENST00000316407 TCHHQ07283 1943 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 PFKFB1P16118 471 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 SMTNP53814 917 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 STAM2O75886 525 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 FBXW10Q5XX13 1052 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 CACTINQ8WUQ7 758 aaKnown RBP9.55□□□□□ -0.88
USF3-201ENST00000316407 KIAA1468Q9P260 1216 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 TSC22D4Q9Y3Q8 395 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 BCRP11274 1271 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 CASP8Q14790 479 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 RFX8Q6ZV50 586 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 TRIML2Q8N7C3 387 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 STRIP2Q9ULQ0 834 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 PLTPP55058 493 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 TRIP13Q15645 432 aaPredicted RBP9.55□□□□□ -0.88
USF3-201ENST00000316407 KRT24Q2M2I5 525 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 MRPL50Q8N5N7 158 aaKnown RBP9.55□□□□□ -0.88
USF3-201ENST00000316407 DKC1O60832 514 aaKnown RBP eCLIP9.55□□□□□ -0.88
USF3-201ENST00000316407 NDUFA8P51970 172 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 ME3Q16798 604 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 GSTO1P78417 241 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 PASKQ96RG2 1323 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 EFCAB5A4FU69 1503 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 MYH6P13533 1939 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 TRIM66O15016 1216 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 ASPHQ12797 758 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 HAUS8Q9BT25 410 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 WARS2Q9UGM6 360 aaKnown RBP9.55□□□□□ -0.88
USF3-201ENST00000316407 CALCRLQ16602 461 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 TTC38Q5R3I4 469 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 CACYBPQ9HB71 228 aaKnown RBP9.55□□□□□ -0.88
USF3-201ENST00000316407 PRXQ9BXM0 1461 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 TTC4O95801 387 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 SF3B3Q15393 1217 aaKnown RBP9.55□□□□□ -0.88
USF3-201ENST00000316407 HERC4Q5GLZ8 1057 aaPredicted RBP9.55□□□□□ -0.88
USF3-201ENST00000316407 SMYD4Q8IYR2 804 aaPredicted RBP9.55□□□□□ -0.88
USF3-201ENST00000316407 MCUQ8NE86 351 aa9.55□□□□□ -0.88
USF3-201ENST00000316407 PHLPP2Q6ZVD8 1323 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 CCDC85BQ15834 202 aaPredicted RBP9.54□□□□□ -0.88
USF3-201ENST00000316407 C6orf118Q5T5N4 469 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 CUTAO60888 179 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 HEXIM1O94992 359 aaKnown RBP9.54□□□□□ -0.88
USF3-201ENST00000316407 KRT19P08727 400 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 ECE1P42892 770 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 NEK2P51955 445 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 DHX9Q08211 1270 aaKnown RBP9.54□□□□□ -0.88
USF3-201ENST00000316407 SLMAPQ14BN4 828 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 ARMC2Q8NEN0 867 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 ENAHQ8N8S7 591 aaPredicted RBP9.54□□□□□ -0.88
USF3-201ENST00000316407 XAGE3Q8WTP9 111 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 DDX28Q9NUL7 540 aaKnown RBP9.54□□□□□ -0.88
USF3-201ENST00000316407 GSTA4O15217 222 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 EPHB4P54760 987 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 RAPH1Q70E73 1250 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 OR8K1Q8NGG5 319 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 CMTR1Q8N1G2 835 aaKnown RBP9.54□□□□□ -0.88
USF3-201ENST00000316407 CHMP6Q96FZ7 201 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 LBHD1Q9BQE6 289 aaPredicted RBP9.54□□□□□ -0.88
USF3-201ENST00000316407 PEG3Q9GZU2 1588 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 H3BRJ5 948 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 TOM1L1O75674 476 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 SLFN14P0C7P3 912 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 TRIM59Q8IWR1 403 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 SKA2Q8WVK7 121 aaPredicted RBP9.54□□□□□ -0.88
USF3-201ENST00000316407 NFU1Q9UMS0 254 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms