RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 ANGEL1Q9UNK9 670 aaKnown RBP12.26□□□□□ -0.45
LSM3-201ENST00000306024 TAF6LQ9Y6J9 622 aa12.26□□□□□ -0.45
LSM3-201ENST00000306024 COL5A3P25940 1745 aaPredicted RBP12.26□□□□□ -0.45
LSM3-201ENST00000306024 CDKL5O76039 1030 aa12.26□□□□□ -0.45
LSM3-201ENST00000306024 FAM47AQ5JRC9 791 aa12.26□□□□□ -0.45
LSM3-201ENST00000306024 INCENPQ9NQS7 918 aa12.26□□□□□ -0.45
LSM3-201ENST00000306024 ZNRF3Q9ULT6 936 aa12.26□□□□□ -0.45
LSM3-201ENST00000306024 ZBTB12Q9Y330 459 aaPredicted RBP12.26□□□□□ -0.45
LSM3-201ENST00000306024 EP400Q96L91 3159 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 N4BP1O75113 896 aaKnown RBP12.25□□□□□ -0.45
LSM3-201ENST00000306024 REXO1L1PQ8IX06 675 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 TMTC2Q8N394 836 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 USP28Q96RU2 1077 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 KAT14Q9H8E8 782 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 DCP1AQ9NPI6 582 aaPredicted RBP12.25□□□□□ -0.45
LSM3-201ENST00000306024 DONSONQ9NYP3 566 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 KIAA1468Q9P260 1216 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 LY75O60449 1722 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 RNF40O75150 1001 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 SRGAP1Q7Z6B7 1085 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 ADGRA1Q86SQ6 560 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 TMEM87BQ96K49 555 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 KCNQ5Q9NR82 932 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 DAGLAQ9Y4D2 1042 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 N4BP2Q86UW6 1770 aaPredicted RBP12.25□□□□□ -0.45
LSM3-201ENST00000306024 TCP10L2B9ZVM9 353 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 CYP2D6P10635 497 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 MYL5Q02045 173 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 CASP8Q14790 479 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 C15orf52Q6ZUT6 534 aaKnown RBP12.25□□□□□ -0.45
LSM3-201ENST00000306024 CEP89Q96ST8 783 aa12.25□□□□□ -0.45
LSM3-201ENST00000306024 TFAP4Q01664 338 aa12.24□□□□□ -0.45
LSM3-201ENST00000306024 SAFBQ15424 915 aaKnown RBP eCLIP12.24□□□□□ -0.45
LSM3-201ENST00000306024 TSR1Q2NL82 804 aaKnown RBP12.24□□□□□ -0.45
LSM3-201ENST00000306024 FBXW10Q5XX13 1052 aa12.24□□□□□ -0.45
LSM3-201ENST00000306024 TBC1D10CQ8IV04 446 aa12.24□□□□□ -0.45
LSM3-201ENST00000306024 BCAS4Q8TDM0 211 aa12.24□□□□□ -0.45
LSM3-201ENST00000306024 WDR24Q96S15 920 aa12.24□□□□□ -0.45
LSM3-201ENST00000306024 NCOA5Q9HCD5 579 aaKnown RBP12.24□□□□□ -0.45
LSM3-201ENST00000306024 MED4Q9NPJ6 270 aa12.24□□□□□ -0.45
LSM3-201ENST00000306024 TCRBV5S4A2TA0A5A2 114 aa12.24□□□□□ -0.45
LSM3-201ENST00000306024 H7C1D1 291 aa12.24□□□□□ -0.45
LSM3-201ENST00000306024 PSEN1P49768 467 aa12.24□□□□□ -0.45
LSM3-201ENST00000306024 ADKP55263 362 aaKnown RBP12.24□□□□□ -0.45
LSM3-201ENST00000306024 SATB1Q01826 763 aa12.24□□□□□ -0.45
LSM3-201ENST00000306024 GRIK5Q16478 980 aa12.24□□□□□ -0.45
LSM3-201ENST00000306024 TMED8Q6PL24 325 aaPredicted RBP12.24□□□□□ -0.45
LSM3-201ENST00000306024 CICQ96RK0 1608 aaPredicted RBP12.24□□□□□ -0.45
LSM3-201ENST00000306024 SUGT1Q9Y2Z0 365 aa12.24□□□□□ -0.45
LSM3-201ENST00000306024 ATP1A3P13637 1013 aa12.24□□□□□ -0.45
LSM3-201ENST00000306024 ALX1Q15699 326 aa12.24□□□□□ -0.45
LSM3-201ENST00000306024 MYL10Q9BUA6 226 aa12.24□□□□□ -0.45
LSM3-201ENST00000306024 FHDC1Q9C0D6 1143 aaPredicted RBP12.24□□□□□ -0.45
LSM3-201ENST00000306024 TDRD3Q9H7E2 651 aaKnown RBP12.24□□□□□ -0.45
LSM3-201ENST00000306024 EPB41L4AQ9HCS5 686 aaPredicted RBP12.24□□□□□ -0.45
LSM3-201ENST00000306024 CABP5Q9NP86 173 aa12.24□□□□□ -0.45
LSM3-201ENST00000306024 MCM3P25205 808 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 MMP14P50281 582 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 STOX1Q6ZVD7 989 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 DYNLL2Q96FJ2 89 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 BCCIPQ9P287 314 aaKnown RBP eCLIP12.23□□□□□ -0.45
LSM3-201ENST00000306024 GOLGA6CA6NDK9 693 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 NDUFAB1O14561 156 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 GOLGA6DP0CG33 693 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 MICALCLQ6ZW33 695 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 SLC24A3Q9HC58 644 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 GOLGA6AQ9NYA3 693 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 SCN7AQ01118 1682 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 PDS5AQ29RF7 1337 aaKnown RBP12.23□□□□□ -0.45
LSM3-201ENST00000306024 PSMD14O00487 310 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 IPO7O95373 1038 aaKnown RBP12.23□□□□□ -0.45
LSM3-201ENST00000306024 XBP1P17861 261 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 GBP2P32456 591 aaPredicted RBP12.23□□□□□ -0.45
LSM3-201ENST00000306024 NLRP12P59046 1061 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 NAA25Q14CX7 972 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 RTN1Q16799 776 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 ZNF526Q8TF50 670 aaPredicted RBP12.23□□□□□ -0.45
LSM3-201ENST00000306024 SUGCTQ9HAC7 445 aa12.23□□□□□ -0.45
LSM3-201ENST00000306024 GPHNQ9NQX3 736 aaPredicted RBP12.23□□□□□ -0.45
LSM3-201ENST00000306024 TAF1P21675 1872 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 FAM205AQ6ZU69 1335 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 TAF1LQ8IZX4 1826 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 SSBP05455 408 aaKnown RBP eCLIP12.22□□□□□ -0.45
LSM3-201ENST00000306024 TUBBP07437 444 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 CLNS1AP54105 237 aaKnown RBP12.22□□□□□ -0.45
LSM3-201ENST00000306024 FILIP1LQ4L180 1135 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 RBM43Q6ZSC3 357 aaKnown RBP12.22□□□□□ -0.45
LSM3-201ENST00000306024 ZSWIM5Q9P217 1185 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 FAM169AQ9Y6X4 670 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 MYO3BQ8WXR4 1341 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 ZEB2O60315 1214 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 TNNI2P48788 182 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 RASSF7Q02833 373 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 LRRC31Q6UY01 552 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 IQUBQ8NA54 791 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 RIOK1Q9BRS2 568 aaKnown RBP12.22□□□□□ -0.45
LSM3-201ENST00000306024 MRFAP1Q9Y605 127 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 UBR3Q6ZT12 1888 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 PTPDC1A2A3K4 754 aa12.22□□□□□ -0.45
LSM3-201ENST00000306024 SYKP43405 635 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms