RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 FAM227BQ96M60 508 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 ADGRG1Q9Y653 693 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 SYNRGQ9UMZ2 1314 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 MFAP3LO75121 409 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 APOEP02649 317 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 CCDC172P0C7W6 258 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 KRT10P13645 584 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 PLA2G4AP47712 749 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 SESN3P58005 492 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 ARMCX5Q6P1M9 558 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 TBC1D31Q96DN5 1066 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 LIMA1Q9UHB6 759 aaKnown RBP7.08□□□□□ -1.28
VPS35-201ENST00000299138 NRBP1Q9UHY1 535 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 SRPRBQ9Y5M8 271 aaKnown RBP7.08□□□□□ -1.28
VPS35-201ENST00000299138 NID2Q14112 1375 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 hCG_1984214I3L0E3 225 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 BIN1O00499 593 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 STK10O94804 968 aaKnown RBP7.08□□□□□ -1.28
VPS35-201ENST00000299138 HSPD1P10809 573 aaKnown RBP7.08□□□□□ -1.28
VPS35-201ENST00000299138 PHEXP78562 749 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 AIMP1Q12904 312 aaKnown RBP7.08□□□□□ -1.28
VPS35-201ENST00000299138 TSHZ3Q63HK5 1081 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 CADPS2Q86UW7 1296 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 ZNF713Q8N859 430 aaPredicted RBP7.08□□□□□ -1.28
VPS35-201ENST00000299138 UBLCP1Q8WVY7 318 aaPredicted RBP7.08□□□□□ -1.28
VPS35-201ENST00000299138 SUCLG2Q96I99 432 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 TMEM51Q9NW97 253 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 LRRD1A4D1F6 860 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 GOLGA6CA6NDK9 693 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 LRRC10BA6NIK2 292 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 PPP1R12AO14974 1030 aaPredicted RBP7.08□□□□□ -1.28
VPS35-201ENST00000299138 CHUKO15111 745 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 HIP1RO75146 1068 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 GOLGA6DP0CG33 693 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 MORC3Q14149 939 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 DPCR1Q3MIW9 517 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 FAM129AQ9BZQ8 928 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 GOLGA6AQ9NYA3 693 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 RWDD2AQ9UIY3 292 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 LRRC37A3O60309 1634 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 GOLGA6BA6NDN3 693 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 SASH1O94885 1247 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 PMS1P54277 932 aaKnown RBP7.08□□□□□ -1.28
VPS35-201ENST00000299138 CCDC125Q86Z20 511 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 REXO1L1PQ8IX06 675 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 TSC1Q92574 1164 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 ESR2Q92731 530 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 TSG101Q99816 390 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 BATF3Q9NR55 127 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 PCYT1AP49585 367 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 CASP8Q14790 479 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 C10orf76Q5T2E6 689 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 COG1Q8WTW3 980 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 AIDAQ96BJ3 306 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 CABS1Q96KC9 395 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 CCDC77Q9BR77 488 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 LZTS2Q9BRK4 669 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 PPME1Q9Y570 386 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 A0A1B0GVL5 298 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 ZFXP17010 805 aaPredicted RBP7.07□□□□□ -1.28
VPS35-201ENST00000299138 SPDYCQ5MJ68 293 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 GSTA5Q7RTV2 222 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 DHTKD1Q96HY7 919 aaPredicted RBP7.07□□□□□ -1.28
VPS35-201ENST00000299138 CAPN7Q9Y6W3 813 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 BAG2O95816 211 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 TNFRSF8P28908 595 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 RICTORQ6R327 1708 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 MB21D2Q8IYB1 491 aaPredicted RBP7.07□□□□□ -1.28
VPS35-201ENST00000299138 SIL1Q9H173 461 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 THAP9Q9H5L6 903 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 BICC1Q9H694 974 aaKnown RBP7.07□□□□□ -1.28
VPS35-201ENST00000299138 CNOT10Q9H9A5 744 aaKnown RBP7.07□□□□□ -1.28
VPS35-201ENST00000299138 GRID2IPA4D2P6 1211 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 EPB41P11171 864 aaKnown RBP7.07□□□□□ -1.28
VPS35-201ENST00000299138 NDUFA8P51970 172 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 IQCA1Q86XH1 822 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 MMGT1Q8N4V1 131 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 AK8Q96MA6 479 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 PLA2G12BQ9BX93 195 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 HYOU1Q9Y4L1 999 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 PCDHA5Q9Y5H7 936 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 ARHGAP23Q9P227 1491 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 ZNF18P17022 549 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 USP14P54578 494 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 RTN1Q16799 776 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 SLC4A8Q2Y0W8 1093 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 BEND6Q5SZJ8 279 aaPredicted RBP7.07□□□□□ -1.28
VPS35-201ENST00000299138 KCTD17Q8N5Z5 321 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 USHBP1Q8N6Y0 703 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 SPAG5Q96R06 1193 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 GLT8D2Q9H1C3 349 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 ANKFY1Q9P2R3 1169 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 RASAL2Q9UJF2 1139 aa7.07□□□□□ -1.28
VPS35-201ENST00000299138 DBNLQ9UJU6 430 aaKnown RBP7.07□□□□□ -1.28
VPS35-201ENST00000299138 HMGB1P1B2RPK0 211 aaPredicted RBP7.06□□□□□ -1.28
VPS35-201ENST00000299138 CCDC159P0C7I6 412 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 ZBED6P86452 979 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 NCAPHQ15003 741 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 ZNF569Q5MCW4 686 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 NAPBQ9H115 298 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms