RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 GSPT2Q8IYD1 628 aaKnown RBP12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 CNNM2Q9H8M5 875 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 TBK1Q9UHD2 729 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 PLAAQ9Y263 795 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 ANGPTL3Q9Y5C1 460 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 POLR3CQ9BUI4 534 aaPredicted RBP12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 UBE3BQ7Z3V4 1068 aa12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 SESTD1Q86VW0 696 aa12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 PASKQ96RG2 1323 aa12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 DHX32Q7L7V1 743 aaKnown RBP12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 CCDC151A5D8V7 595 aa12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 ELAC2Q9BQ52 826 aaKnown RBP12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 PIK3R4Q99570 1358 aa12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 MYO18AQ92614 2054 aaKnown RBP12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 SH3GL1Q99961 368 aa12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 PSDA5PKW4 1024 aaPredicted RBP12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 GNGT2O14610 69 aa12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 BEND6Q5SZJ8 279 aaPredicted RBP12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 CARD10Q9BWT7 1032 aa12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 NOVA2Q9UNW9 492 aaKnown RBP12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 HARSP12081 509 aaKnown RBP12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 OR8K1Q8NGG5 319 aa12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 SLC12A2P55011 1212 aa12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 UIMC1Q96RL1 719 aa12.85□□□□□ -0.35
SHROOM3-201ENST00000296043 DCUN1D2Q6PH85 259 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 ENOX1Q8TC92 643 aaKnown RBP12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 TBC1D23Q9NUY8 699 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 TRPC5Q9UL62 973 aaPredicted RBP12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 SERPINB3P29508 390 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 FANCLQ9NW38 375 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 ARHGAP10A1A4S6 786 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 FAM83GA6ND36 823 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 MFSD4BQ5TF39 518 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 ARL10Q8N8L6 244 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 SMYD2Q9NRG4 433 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 MAD1L1Q9Y6D9 718 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 FCHSD1Q86WN1 690 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 ANKRD44Q8N8A2 993 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 HDAC11Q96DB2 347 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 CYP4F22Q6NT55 531 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 ACRBPQ8NEB7 543 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 TTLL3Q9Y4R7 772 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 PHACTR3Q96KR7 559 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 NDE1Q9NXR1 346 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 ZBTB21Q9ULJ3 1066 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 TIAM1Q13009 1591 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 ATF7P17544 494 aaPredicted RBP12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 NBNO60934 754 aa12.84□□□□□ -0.35
SHROOM3-201ENST00000296043 PAWRQ96IZ0 340 aaKnown RBP12.83□□□□□ -0.35
SHROOM3-201ENST00000296043 SIKE1Q9BRV8 207 aa12.83□□□□□ -0.35
SHROOM3-201ENST00000296043 COBLO75128 1261 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 TOM1L1O75674 476 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 ZNF189O75820 626 aaPredicted RBP12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 NAA30Q147X3 362 aaPredicted RBP12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 KIAA0825Q8IV33 1275 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 ZNF653Q96CK0 615 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 A0A087WWV3 80 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 HNRNPCL2B2RXH8 293 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 HNRNPCL1O60812 293 aaKnown RBP12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 HFM1A2PYH4 1435 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 HMGB1P1B2RPK0 211 aaPredicted RBP12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 CALUO43852 315 aaPredicted RBP12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 TPP2P29144 1249 aaPredicted RBP12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 NCAPH2Q6IBW4 605 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 CC2D1AQ6P1N0 951 aaPredicted RBP12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 STAMQ92783 540 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 DIAPH2O60879 1101 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 H3BRJ5 948 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 MAPK13O15264 365 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 MAFGO15525 162 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 JAK2O60674 1132 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 CARSP49589 748 aaKnown RBP12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 FOXD4Q12950 439 aaPredicted RBP12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 TRAF7Q6Q0C0 670 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 TRIM59Q8IWR1 403 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 A0A0G2JND7 137 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 KRT8P05787 483 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 UBE3AQ05086 875 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 TMEM154Q6P9G4 183 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 CACYBPQ9HB71 228 aaKnown RBP12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 PSPC1Q8WXF1 523 aaKnown RBP12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 ING2Q9H160 280 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 RMI1Q9H9A7 625 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 PAG1Q9NWQ8 432 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 TPCN1Q9ULQ1 816 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 GTPBP10A4D1E9 387 aaKnown RBP12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 MMEP08473 750 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 RASSF7Q02833 373 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 DACH2Q96NX9 599 aa12.83□□□□□ -0.36
SHROOM3-201ENST00000296043 SYCE1LA8MT33 242 aa12.82□□□□□ -0.36
SHROOM3-201ENST00000296043 NLRP14Q86W24 1093 aa12.82□□□□□ -0.36
SHROOM3-201ENST00000296043 C9orf84Q5VXU9 1444 aa12.82□□□□□ -0.36
SHROOM3-201ENST00000296043 TCP11X2Q5H9J9 407 aa12.82□□□□□ -0.36
SHROOM3-201ENST00000296043 TMCO5AQ8N6Q1 288 aa12.82□□□□□ -0.36
SHROOM3-201ENST00000296043 CCDC124Q96CT7 223 aaKnown RBP12.82□□□□□ -0.36
SHROOM3-201ENST00000296043 ASCC2Q9H1I8 757 aaPredicted RBP12.82□□□□□ -0.36
SHROOM3-201ENST00000296043 ATP5J2-PTCD1G3V325 749 aa12.82□□□□□ -0.36
SHROOM3-201ENST00000296043 GYG2O15488 501 aa12.82□□□□□ -0.36
SHROOM3-201ENST00000296043 PTCD1O75127 700 aaKnown RBP12.82□□□□□ -0.36
SHROOM3-201ENST00000296043 KCNA3P22001 575 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms