RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CEP95Q96GE4 821 aa18.77■□□□□ 0.59
VPS54-201ENST00000272322 ZCCHC17Q9NP64 241 aaKnown RBP18.77■□□□□ 0.59
VPS54-201ENST00000272322 A0A1B0GTH6 734 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 SMCO2A6NFE2 343 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 GYPCP04921 128 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 SSBP05455 408 aaKnown RBP eCLIP18.76■□□□□ 0.59
VPS54-201ENST00000272322 SLC16A2P36021 539 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 RAD51AP2Q09MP3 1159 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 GSDMAQ96QA5 445 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 PCDHA6Q9UN73 950 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 PCDHA8Q9Y5H6 950 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 USP17L5A8MUK1 530 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 KCNJ18B7U540 433 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 CDK8P49336 464 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 KLK7P49862 253 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 TBX2Q13207 712 aaPredicted RBP18.76■□□□□ 0.59
VPS54-201ENST00000272322 KCNJ12Q14500 433 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 SLC10A5Q5PT55 438 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 SPTY2D1Q68D10 685 aaPredicted RBP18.76■□□□□ 0.59
VPS54-201ENST00000272322 GUCA1BQ9UMX6 200 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 PCDHA4Q9UN74 947 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 ROBO1Q9Y6N7 1651 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 ENC1O14682 589 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 STX10O60499 249 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 CCDC175P0C221 793 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 IDEP14735 1019 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 ERCC5P28715 1186 aaPredicted RBP18.76■□□□□ 0.59
VPS54-201ENST00000272322 PPP2R5BQ15173 497 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 BARGINQ6ZT62 677 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 LRRC15Q8TF66 581 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 CD209Q9NNX6 404 aa18.76■□□□□ 0.59
VPS54-201ENST00000272322 RASA1P20936 1047 aa18.75■□□□□ 0.59
VPS54-201ENST00000272322 PPP2R3AQ06190 1150 aa18.75■□□□□ 0.59
VPS54-201ENST00000272322 APTXQ7Z2E3 356 aaKnown RBP18.75■□□□□ 0.59
VPS54-201ENST00000272322 SMAP1Q8IYB5 467 aaPredicted RBP18.75■□□□□ 0.59
VPS54-201ENST00000272322 WDR66Q8TBY9 1149 aa18.75■□□□□ 0.59
VPS54-201ENST00000272322 FCER1AP12319 257 aa18.75■□□□□ 0.59
VPS54-201ENST00000272322 TXNRD1Q16881 649 aa18.75■□□□□ 0.59
VPS54-201ENST00000272322 PRR5LQ6MZQ0 368 aa18.75■□□□□ 0.59
VPS54-201ENST00000272322 PDXDC2PQ6P474 469 aa18.75■□□□□ 0.59
VPS54-201ENST00000272322 ZNF804AQ7Z570 1209 aa18.75■□□□□ 0.59
VPS54-201ENST00000272322 TRIML1Q8N9V2 468 aa18.75■□□□□ 0.59
VPS54-201ENST00000272322 L2HGDHQ9H9P8 463 aa18.75■□□□□ 0.59
VPS54-201ENST00000272322 RHOXF2BP0C7M4 288 aa18.75■□□□□ 0.59
VPS54-201ENST00000272322 ASIC1P78348 528 aa18.75■□□□□ 0.59
VPS54-201ENST00000272322 E2F4Q16254 413 aa18.75■□□□□ 0.59
VPS54-201ENST00000272322 RHOXF2Q9BQY4 288 aa18.75■□□□□ 0.59
VPS54-201ENST00000272322 POLD4Q9HCU8 107 aa18.75■□□□□ 0.59
VPS54-201ENST00000272322 BCL9LQ86UU0 1499 aa18.74■□□□□ 0.59
VPS54-201ENST00000272322 TOM1O60784 492 aa18.74■□□□□ 0.59
VPS54-201ENST00000272322 GYS2P54840 703 aa18.74■□□□□ 0.59
VPS54-201ENST00000272322 GRAPQ13588 217 aa18.74■□□□□ 0.59
VPS54-201ENST00000272322 SPATA20Q8TB22 786 aa18.74■□□□□ 0.59
VPS54-201ENST00000272322 GRAPLQ8TC17 118 aaPredicted RBP18.74■□□□□ 0.59
VPS54-201ENST00000272322 COPB1P53618 953 aaKnown RBP18.74■□□□□ 0.59
VPS54-201ENST00000272322 TCP10Q12799 353 aa18.74■□□□□ 0.59
VPS54-201ENST00000272322 CCDC93Q567U6 631 aa18.74■□□□□ 0.59
VPS54-201ENST00000272322 SH3RF1Q7Z6J0 888 aa18.74■□□□□ 0.59
VPS54-201ENST00000272322 MARCH6O60337 910 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 TPM1P09493 284 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 PLCG1P19174 1290 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 SLC39A2Q9NP94 309 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 CALML3P27482 149 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 SOGA3Q5TF21 947 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 TMCO3Q6UWJ1 677 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 DISC1Q9NRI5 854 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 B4DLN1 442 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 G3V3G9 751 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 CCP110O43303 1012 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 PARP1P09874 1014 aaKnown RBP18.73■□□□□ 0.59
VPS54-201ENST00000272322 TNNI2P48788 182 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 SHROOM1Q2M3G4 852 aaPredicted RBP18.73■□□□□ 0.59
VPS54-201ENST00000272322 NAALADL2Q58DX5 795 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 DCAF8Q5TAQ9 597 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 KRT222Q8N1A0 295 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 TBCKQ8TEA7 893 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 POLLQ9UGP5 575 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 ADGRG1Q9Y653 693 aa18.73■□□□□ 0.59
VPS54-201ENST00000272322 SERPINB2P05120 415 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 SNAP25P60880 206 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 PDE4DQ08499 809 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 ENOX2Q16206 610 aaKnown RBP18.72■□□□□ 0.59
VPS54-201ENST00000272322 SLC35F6Q8N357 371 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 FEZ1Q99689 392 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 KANSL2Q9H9L4 492 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 TBC1D7Q9P0N9 293 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 SEC63Q9UGP8 760 aaKnown RBP18.72■□□□□ 0.59
VPS54-201ENST00000272322 SEMA3EO15041 775 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 GTPBP6O43824 516 aaPredicted RBP18.72■□□□□ 0.59
VPS54-201ENST00000272322 MFAP3LO75121 409 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 UBE2SQ16763 222 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 ANKRD20A12PQ8NF67 263 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 GGA1Q9UJY5 639 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 FGRP09769 529 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 ERVK-24P63145 666 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 LRRC41Q15345 812 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 GDAP1L1Q96MZ0 367 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 MTA3Q9BTC8 594 aa18.72■□□□□ 0.59
VPS54-201ENST00000272322 POTEMA6NI47 508 aa18.71■□□□□ 0.59
VPS54-201ENST00000272322 KIF5CO60282 957 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms