RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 HTTP42858 3142 aa19.61■□□□□ 0.73
SDCBP-201ENST00000260130 PRC1O43663 620 aa19.61■□□□□ 0.73
SDCBP-201ENST00000260130 ZBED4O75132 1171 aa19.61■□□□□ 0.73
SDCBP-201ENST00000260130 FDX1P10109 184 aa19.61■□□□□ 0.73
SDCBP-201ENST00000260130 WTAPQ15007 396 aa19.61■□□□□ 0.73
SDCBP-201ENST00000260130 IGDCC4Q8TDY8 1250 aa19.61■□□□□ 0.73
SDCBP-201ENST00000260130 MTA3Q9BTC8 594 aa19.61■□□□□ 0.73
SDCBP-201ENST00000260130 CTDP1Q9Y5B0 961 aaPredicted RBP19.61■□□□□ 0.73
SDCBP-201ENST00000260130 PTCH2Q9Y6C5 1203 aa19.61■□□□□ 0.73
SDCBP-201ENST00000260130 FLT3LGP49771 235 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 ZNF543Q08ER8 600 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 TMEM67Q5HYA8 995 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 TTBK2Q6IQ55 1244 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 GPR142Q7Z601 462 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 PLEKHH3Q7Z736 793 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 SHCBP1Q8NEM2 672 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 ABHD8Q96I13 439 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 USP26Q9BXU7 913 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 SLC38A10Q9HBR0 1119 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 CWC22Q9HCG8 908 aaKnown RBP19.6■□□□□ 0.73
SDCBP-201ENST00000260130 GPCPD1Q9NPB8 672 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 ZNF214Q9UL59 606 aaPredicted RBP19.6■□□□□ 0.73
SDCBP-201ENST00000260130 HPS5Q9UPZ3 1129 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 FRMPD2Q68DX3 1309 aaPredicted RBP19.6■□□□□ 0.73
SDCBP-201ENST00000260130 STAT3P40763 770 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 COL9A3Q14050 684 aaPredicted RBP19.6■□□□□ 0.73
SDCBP-201ENST00000260130 ADCK5Q3MIX3 580 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 WDR78Q5VTH9 848 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 BTNL9Q6UXG8 535 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 RAET1EQ8TD07 263 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 GJD2Q9UKL4 321 aa19.6■□□□□ 0.73
SDCBP-201ENST00000260130 GPATCH4Q5T3I0 446 aaKnown RBP19.59■□□□□ 0.73
SDCBP-201ENST00000260130 TMEM87BQ96K49 555 aa19.59■□□□□ 0.73
SDCBP-201ENST00000260130 SENP2Q9HC62 589 aa19.59■□□□□ 0.73
SDCBP-201ENST00000260130 PRR12Q9ULL5 1215 aa19.59■□□□□ 0.73
SDCBP-201ENST00000260130 A0A0G2JMZ2 1700 aa19.59■□□□□ 0.73
SDCBP-201ENST00000260130 SLC25A27O95847 323 aa19.59■□□□□ 0.73
SDCBP-201ENST00000260130 ERCC3P19447 782 aa19.59■□□□□ 0.73
SDCBP-201ENST00000260130 SLC16A2P36021 539 aa19.59■□□□□ 0.73
SDCBP-201ENST00000260130 RIOX2Q8IUF8 465 aa19.59■□□□□ 0.73
SDCBP-201ENST00000260130 MROH8Q9H579 483 aa19.59■□□□□ 0.73
SDCBP-201ENST00000260130 SNX14Q9Y5W7 946 aa19.59■□□□□ 0.73
SDCBP-201ENST00000260130 PARP14Q460N5 1801 aa19.58■□□□□ 0.73
SDCBP-201ENST00000260130 ATP2A1O14983 1001 aa19.58■□□□□ 0.72
SDCBP-201ENST00000260130 NCAPG2Q86XI2 1143 aa19.58■□□□□ 0.72
SDCBP-201ENST00000260130 CPXCR1Q8N123 301 aa19.58■□□□□ 0.72
SDCBP-201ENST00000260130 TEX13BQ9BXU2 312 aa19.58■□□□□ 0.72
SDCBP-201ENST00000260130 GOLGA8HP0CJ92 632 aa19.57■□□□□ 0.72
SDCBP-201ENST00000260130 OAZ1P54368 228 aa19.57■□□□□ 0.72
SDCBP-201ENST00000260130 IRF5Q13568 498 aa19.57■□□□□ 0.72
SDCBP-201ENST00000260130 TMTC2Q8N394 836 aa19.57■□□□□ 0.72
SDCBP-201ENST00000260130 NUDT12Q9BQG2 462 aa19.57■□□□□ 0.72
SDCBP-201ENST00000260130 LY9Q9HBG7 655 aa19.57■□□□□ 0.72
SDCBP-201ENST00000260130 IVNS1ABPQ9Y6Y0 642 aa19.57■□□□□ 0.72
SDCBP-201ENST00000260130 MGAMO43451 1857 aa19.57■□□□□ 0.72
SDCBP-201ENST00000260130 EIF5BO60841 1220 aaKnown RBP19.57■□□□□ 0.72
SDCBP-201ENST00000260130 SEC24BO95487 1268 aa19.57■□□□□ 0.72
SDCBP-201ENST00000260130 HMGB1P09429 215 aaKnown RBP19.57■□□□□ 0.72
SDCBP-201ENST00000260130 PARP1P09874 1014 aaKnown RBP19.57■□□□□ 0.72
SDCBP-201ENST00000260130 PTPREP23469 700 aa19.57■□□□□ 0.72
SDCBP-201ENST00000260130 ASPRV1Q53RT3 343 aa19.57■□□□□ 0.72
SDCBP-201ENST00000260130 SYDE2Q5VT97 1194 aa19.57■□□□□ 0.72
SDCBP-201ENST00000260130 DHX32Q7L7V1 743 aaKnown RBP19.57■□□□□ 0.72
SDCBP-201ENST00000260130 SOCS4Q8WXH5 440 aa19.57■□□□□ 0.72
SDCBP-201ENST00000260130 RAVER2Q9HCJ3 691 aaKnown RBP19.57■□□□□ 0.72
SDCBP-201ENST00000260130 GPHNQ9NQX3 736 aaPredicted RBP19.57■□□□□ 0.72
SDCBP-201ENST00000260130 CENPFP49454 3210 aa19.56■□□□□ 0.72
SDCBP-201ENST00000260130 SH2B2O14492 632 aaPredicted RBP19.56■□□□□ 0.72
SDCBP-201ENST00000260130 STRNO43815 780 aa19.56■□□□□ 0.72
SDCBP-201ENST00000260130 COPB2P35606 906 aa19.56■□□□□ 0.72
SDCBP-201ENST00000260130 EXOSC10Q01780 885 aaKnown RBP19.56■□□□□ 0.72
SDCBP-201ENST00000260130 SLC9C1Q4G0N8 1177 aa19.56■□□□□ 0.72
SDCBP-201ENST00000260130 MORN1Q5T089 497 aa19.56■□□□□ 0.72
SDCBP-201ENST00000260130 SNRNP48Q6IEG0 339 aaKnown RBP19.56■□□□□ 0.72
SDCBP-201ENST00000260130 LIFRP42702 1097 aa19.56■□□□□ 0.72
SDCBP-201ENST00000260130 WDR19Q8NEZ3 1342 aa19.55■□□□□ 0.72
SDCBP-201ENST00000260130 SLC15A5A6NIM6 579 aa19.55■□□□□ 0.72
SDCBP-201ENST00000260130 CATIPQ7Z7H3 387 aa19.55■□□□□ 0.72
SDCBP-201ENST00000260130 NBPF11Q86T75 865 aa19.55■□□□□ 0.72
SDCBP-201ENST00000260130 USP6NLQ92738 828 aa19.55■□□□□ 0.72
SDCBP-201ENST00000260130 JAKMIP1Q96N16 626 aaKnown RBP19.55■□□□□ 0.72
SDCBP-201ENST00000260130 LRRC2Q9BYS8 371 aa19.55■□□□□ 0.72
SDCBP-201ENST00000260130 RIPK3Q9Y572 518 aa19.55■□□□□ 0.72
SDCBP-201ENST00000260130 ADCY3O60266 1144 aa19.54■□□□□ 0.72
SDCBP-201ENST00000260130 GRK4P32298 578 aa19.54■□□□□ 0.72
SDCBP-201ENST00000260130 SNAP25P60880 206 aa19.54■□□□□ 0.72
SDCBP-201ENST00000260130 TROAPQ12815 778 aa19.54■□□□□ 0.72
SDCBP-201ENST00000260130 GRB14Q14449 540 aa19.54■□□□□ 0.72
SDCBP-201ENST00000260130 UBA5Q9GZZ9 404 aa19.54■□□□□ 0.72
SDCBP-201ENST00000260130 RANBP17Q9H2T7 1088 aaKnown RBP19.54■□□□□ 0.72
SDCBP-201ENST00000260130 ZNF536O15090 1300 aa19.54■□□□□ 0.72
SDCBP-201ENST00000260130 CYP2B6P20813 491 aa19.54■□□□□ 0.72
SDCBP-201ENST00000260130 CCDC174Q6PII3 467 aa19.54■□□□□ 0.72
SDCBP-201ENST00000260130 NFXL1Q6ZNB6 911 aa19.54■□□□□ 0.72
SDCBP-201ENST00000260130 SLAIN1Q8ND83 568 aa19.54■□□□□ 0.72
SDCBP-201ENST00000260130 PXYLP1Q8TE99 480 aa19.54■□□□□ 0.72
SDCBP-201ENST00000260130 SH3TC2Q8TF17 1288 aa19.54■□□□□ 0.72
SDCBP-201ENST00000260130 CCDC69A6NI79 296 aa19.53■□□□□ 0.72
SDCBP-201ENST00000260130 FCER1AP12319 257 aa19.53■□□□□ 0.72
SDCBP-201ENST00000260130 XRCC5P13010 732 aaKnown RBP19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms