RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 KCNQ2O43526 872 aa21.09■□□□□ 0.97
CPSF3-201ENST00000238112 TUBB4BP68371 445 aa21.09■□□□□ 0.97
CPSF3-201ENST00000238112 SMC1AQ14683 1233 aaKnown RBP21.09■□□□□ 0.97
CPSF3-201ENST00000238112 DGKHQ86XP1 1220 aa21.09■□□□□ 0.97
CPSF3-201ENST00000238112 NAPGQ99747 312 aaPredicted RBP21.09■□□□□ 0.97
CPSF3-201ENST00000238112 UBXN6Q9BZV1 441 aa21.09■□□□□ 0.97
CPSF3-201ENST00000238112 USP17L8P0C7I0 530 aa21.09■□□□□ 0.97
CPSF3-201ENST00000238112 OAS2P29728 719 aaKnown RBP21.09■□□□□ 0.97
CPSF3-201ENST00000238112 CYP2C19P33261 490 aa21.09■□□□□ 0.97
CPSF3-201ENST00000238112 RASGRP4Q8TDF6 673 aa21.09■□□□□ 0.97
CPSF3-201ENST00000238112 NYXQ9GZU5 481 aa21.09■□□□□ 0.97
CPSF3-201ENST00000238112 MYO1AQ9UBC5 1043 aa21.09■□□□□ 0.97
CPSF3-201ENST00000238112 MYH13Q9UKX3 1938 aa21.08■□□□□ 0.97
CPSF3-201ENST00000238112 GNAQP50148 359 aa21.08■□□□□ 0.97
CPSF3-201ENST00000238112 LONRF2Q1L5Z9 754 aa21.08■□□□□ 0.97
CPSF3-201ENST00000238112 SPTY2D1Q68D10 685 aaPredicted RBP21.08■□□□□ 0.97
CPSF3-201ENST00000238112 FUT8Q9BYC5 575 aa21.08■□□□□ 0.97
CPSF3-201ENST00000238112 JAG2Q9Y219 1238 aa21.08■□□□□ 0.97
CPSF3-201ENST00000238112 RNF225M0QZC1 329 aaPredicted RBP21.07■□□□□ 0.96
CPSF3-201ENST00000238112 PARP1P09874 1014 aaKnown RBP21.07■□□□□ 0.96
CPSF3-201ENST00000238112 USP5P45974 858 aa21.07■□□□□ 0.96
CPSF3-201ENST00000238112 STIM1Q13586 685 aa21.07■□□□□ 0.96
CPSF3-201ENST00000238112 ADSSL1Q8N142 457 aa21.07■□□□□ 0.96
CPSF3-201ENST00000238112 STAG2Q8N3U4 1231 aa21.07■□□□□ 0.96
CPSF3-201ENST00000238112 NT5C2P49902 561 aa21.07■□□□□ 0.96
CPSF3-201ENST00000238112 CCDC148Q8NFR7 591 aa21.07■□□□□ 0.96
CPSF3-201ENST00000238112 SLF1Q9BQI6 1058 aa21.07■□□□□ 0.96
CPSF3-201ENST00000238112 UBA7P41226 1012 aa21.06■□□□□ 0.96
CPSF3-201ENST00000238112 ANKZF1Q9H8Y5 726 aa21.06■□□□□ 0.96
CPSF3-201ENST00000238112 MKNK2Q9HBH9 465 aa21.06■□□□□ 0.96
CPSF3-201ENST00000238112 IL17RBQ9NRM6 502 aa21.06■□□□□ 0.96
CPSF3-201ENST00000238112 TRIM49BA6NDI0 452 aa21.06■□□□□ 0.96
CPSF3-201ENST00000238112 PES1O00541 588 aaKnown RBP21.06■□□□□ 0.96
CPSF3-201ENST00000238112 GRM4Q14833 912 aa21.06■□□□□ 0.96
CPSF3-201ENST00000238112 CCDC178Q5BJE1 867 aa21.06■□□□□ 0.96
CPSF3-201ENST00000238112 C12orf60Q5U649 245 aa21.06■□□□□ 0.96
CPSF3-201ENST00000238112 NBPF5PQ86XG9 351 aaPredicted RBP21.06■□□□□ 0.96
CPSF3-201ENST00000238112 KIAA1551Q9HCM1 1747 aa21.06■□□□□ 0.96
CPSF3-201ENST00000238112 MYL1P05976 194 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 ARHGAP25P42331 645 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 PIP4K2BP78356 416 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 KCNB1Q14721 858 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 WHAMMP3Q1A5X7 153 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 HEATR3Q7Z4Q2 680 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 AMOTL1Q8IY63 956 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 SETDB2Q96T68 719 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 ZKSCAN7Q9P0L1 754 aaPredicted RBP21.05■□□□□ 0.96
CPSF3-201ENST00000238112 ABL1P00519 1130 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 EEF1GP26641 437 aaKnown RBP21.05■□□□□ 0.96
CPSF3-201ENST00000238112 NAALADL2Q58DX5 795 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 GALNT17Q6IS24 598 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 TYW1BQ6NUM6 668 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 MB21D1Q8N884 522 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 HNRNPLLQ8WVV9 542 aaKnown RBP21.05■□□□□ 0.96
CPSF3-201ENST00000238112 ANKS1AQ92625 1134 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 DYNLL2Q96FJ2 89 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 MAGEC2Q9UBF1 373 aaPredicted RBP21.05■□□□□ 0.96
CPSF3-201ENST00000238112 MAD2L2Q9UI95 211 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 PCDHA6Q9UN73 950 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 PCDHA8Q9Y5H6 950 aa21.05■□□□□ 0.96
CPSF3-201ENST00000238112 COL5A3P25940 1745 aaPredicted RBP21.04■□□□□ 0.96
CPSF3-201ENST00000238112 ROBO1Q9Y6N7 1651 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 CTAGE15A4D2H0 777 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 PP2D1A8MPX8 630 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 LGALS16A8MUM7 142 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 M0R2N6 131 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 PSMA7O14818 248 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 RGL2O15211 777 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 ERLIN1O75477 346 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 CTAGE8P0CG41 777 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 TSPY3P0CV98 308 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 TSPY8P0CW00 308 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 KCNQ4P56696 695 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 INF2Q27J81 1249 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 TSR1Q2NL82 804 aaKnown RBP21.04■□□□□ 0.96
CPSF3-201ENST00000238112 CTAGE6Q86UF2 777 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 IRF2BP1Q8IU81 584 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 CTAGE4Q8IX94 777 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 MSANTD4Q8NCY6 345 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 OR8K1Q8NGG5 319 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 TRIM47Q96LD4 638 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 LUC7L2Q9Y383 392 aaKnown RBP21.04■□□□□ 0.96
CPSF3-201ENST00000238112 SPATA31A5Q5VU36 1347 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 SPATA31A7Q8IWB4 1347 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 NDUFA10O95299 355 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 DAGLBQ8NCG7 672 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 TMEM60Q9H2L4 133 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 THAP9Q9H5L6 903 aa21.04■□□□□ 0.96
CPSF3-201ENST00000238112 EPN1Q9Y6I3 576 aaPredicted RBP21.04■□□□□ 0.96
CPSF3-201ENST00000238112 MAST2Q6P0Q8 1798 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 CASZ1Q86V15 1759 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 A0A1W2PQC6 194 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 TTC26A0AVF1 554 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 LAD1O00515 517 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 TXNRD3Q86VQ6 643 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 PLIN2Q99541 437 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 CHP1Q99653 195 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 CCSER1Q9C0I3 900 aa21.03■□□□□ 0.96
CPSF3-201ENST00000238112 ZCCHC17Q9NP64 241 aaKnown RBP21.03■□□□□ 0.96
CPSF3-201ENST00000238112 RAB21Q9UL25 225 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms