RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 DDX60LQ5H9U9 1706 aaKnown RBP9.35□□□□□ -0.91
CPNE3-209ENST00000620393 LDLRAD1Q5T700 205 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 SLFN13Q68D06 897 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 CPLX2Q6PUV4 134 aaKnown RBP9.35□□□□□ -0.91
CPNE3-209ENST00000620393 CCDC144CPQ8IYA2 1237 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 ANKRD13AQ8IZ07 590 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 LRRC47Q8N1G4 583 aaKnown RBP9.35□□□□□ -0.91
CPNE3-209ENST00000620393 SPRYD3Q8NCJ5 442 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 GMCL1P1Q8NEA9 526 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 NAV1Q8NEY1 1877 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 CTCFLQ8NI51 663 aaPredicted RBP9.35□□□□□ -0.91
CPNE3-209ENST00000620393 SMARCC2Q8TAQ2 1214 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 SH2D4AQ9H788 454 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 RBM28Q9NW13 759 aaKnown RBP9.35□□□□□ -0.91
CPNE3-209ENST00000620393 CSADQ9Y600 493 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 ZHX2Q9Y6X8 837 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 NID2Q14112 1375 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 MYH1P12882 1939 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 SSC5DA1L4H1 1573 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 FOCADQ5VW36 1801 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 UBE2Q2LH0YL09 131 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 CPLX1O14810 134 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 PARP1P09874 1014 aaKnown RBP9.34□□□□□ -0.91
CPNE3-209ENST00000620393 PDHBP11177 359 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 IFNAR1P17181 557 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 SMARCA1P28370 1054 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 ECE1P42892 770 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 FKBP1BP68106 108 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 VGLL4Q14135 290 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 USP17L2Q6R6M4 530 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 MOB2Q70IA6 237 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 CCDC84Q86UT8 332 aaPredicted RBP9.34□□□□□ -0.91
CPNE3-209ENST00000620393 C2orf69Q8N8R5 385 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 ZNF280CQ8ND82 737 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 NSUN7Q8NE18 718 aaKnown RBP9.34□□□□□ -0.91
CPNE3-209ENST00000620393 LZTS2Q9BRK4 669 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 AS3MTQ9HBK9 375 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.34□□□□□ -0.91
CPNE3-209ENST00000620393 MAD2L2Q9UI95 211 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 SMC3Q9UQE7 1217 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 CDK5RAP2Q96SN8 1893 aa9.34□□□□□ -0.91
CPNE3-209ENST00000620393 LAMA4Q16363 1823 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 ECM29Q5VYK3 1845 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 C19orf81C9J6K1 198 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 USP17L10C9JJH3 530 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 RIOK3O14730 519 aaKnown RBP9.33□□□□□ -0.92
CPNE3-209ENST00000620393 CDKL5O76039 1030 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 CELF2O95319 508 aaKnown RBP9.33□□□□□ -0.92
CPNE3-209ENST00000620393 NDUFB10O96000 172 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 USP14P54578 494 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 BACE1P56817 501 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 HMGN5P82970 282 aaKnown RBP9.33□□□□□ -0.92
CPNE3-209ENST00000620393 SSRP1Q08945 709 aaKnown RBP9.33□□□□□ -0.92
CPNE3-209ENST00000620393 ZNF543Q08ER8 600 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 FUT2Q10981 343 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 SPP2Q13103 211 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 ASPRV1Q53RT3 343 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 CST9Q5W186 159 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 TMTC3Q6ZXV5 915 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 STAG2Q8N3U4 1231 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 SRBD1Q8N5C6 995 aaKnown RBP9.33□□□□□ -0.92
CPNE3-209ENST00000620393 DCAF4Q8WV16 495 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 GMCL1Q96IK5 515 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 KIAA1683Q9H0B3 1180 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 VCPKMTQ9H867 229 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 ZNF408Q9H9D4 720 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 GBA2Q9HCG7 927 aaPredicted RBP9.33□□□□□ -0.92
CPNE3-209ENST00000620393 GOPCQ9HD26 462 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 MTMR7Q9Y216 660 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 AFG3L2Q9Y4W6 797 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 SNCAIPQ9Y6H5 919 aa9.33□□□□□ -0.92
CPNE3-209ENST00000620393 KLRF2D3W0D1 207 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 PRPF3O43395 683 aaKnown RBP9.32□□□□□ -0.92
CPNE3-209ENST00000620393 JAK2O60674 1132 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 DTNBO60941 627 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 PLEKHA8P1O95397 391 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 FMNL1O95466 1100 aaPredicted RBP9.32□□□□□ -0.92
CPNE3-209ENST00000620393 GOLGA8HP0CJ92 632 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 BMP3P12645 472 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 FDPSP14324 419 aaKnown RBP9.32□□□□□ -0.92
CPNE3-209ENST00000620393 YY1P25490 414 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 GJB2P29033 226 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 DDIT3P35638 169 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 SLC1A4P43007 532 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 PPATQ06203 517 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 KIAA1755Q5JYT7 1200 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 GPATCH4Q5T3I0 446 aaKnown RBP9.32□□□□□ -0.92
CPNE3-209ENST00000620393 NBPF11Q86T75 865 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 ERO1BQ86YB8 467 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 CMTR1Q8N1G2 835 aaKnown RBP9.32□□□□□ -0.92
CPNE3-209ENST00000620393 CCDC82Q8N4S0 544 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 SLAIN1Q8ND83 568 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 SMC1BQ8NDV3 1235 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 RBM46Q8TBY0 533 aaKnown RBP9.32□□□□□ -0.92
CPNE3-209ENST00000620393 SLC10A4Q96EP9 437 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 DDX11Q96FC9 970 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 CLMNQ96JQ2 1002 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 RIOX1Q9H6W3 641 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 ELP3Q9H9T3 547 aa9.32□□□□□ -0.92
CPNE3-209ENST00000620393 ORC3Q9UBD5 711 aaPredicted RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms