RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 CTAGE6Q86UF2 777 aa11.65□□□□□ -0.54
LIG1-220ENST00000601091 CTAGE4Q8IX94 777 aa11.65□□□□□ -0.54
LIG1-220ENST00000601091 VPS54Q9P1Q0 977 aa11.65□□□□□ -0.54
LIG1-220ENST00000601091 WDR19Q8NEZ3 1342 aa11.65□□□□□ -0.54
LIG1-220ENST00000601091 CTDNEP1O95476 244 aa11.65□□□□□ -0.54
LIG1-220ENST00000601091 SSBP05455 408 aaKnown RBP eCLIP11.65□□□□□ -0.54
LIG1-220ENST00000601091 KRT18P05783 430 aaKnown RBP11.65□□□□□ -0.54
LIG1-220ENST00000601091 BCAMP50895 628 aa11.65□□□□□ -0.54
LIG1-220ENST00000601091 ADKP55263 362 aaKnown RBP11.65□□□□□ -0.54
LIG1-220ENST00000601091 ATP2B2Q01814 1243 aa11.65□□□□□ -0.54
LIG1-220ENST00000601091 GBP6Q6ZN66 633 aa11.65□□□□□ -0.54
LIG1-220ENST00000601091 KIAA0825Q8IV33 1275 aa11.65□□□□□ -0.54
LIG1-220ENST00000601091 ANKRD7Q92527 254 aa11.65□□□□□ -0.54
LIG1-220ENST00000601091 SMARCC1Q92922 1105 aaPredicted RBP11.65□□□□□ -0.54
LIG1-220ENST00000601091 SEC31AO94979 1220 aaKnown RBP11.65□□□□□ -0.55
LIG1-220ENST00000601091 TRIM21P19474 475 aaKnown RBP11.65□□□□□ -0.55
LIG1-220ENST00000601091 SESN3P58005 492 aa11.65□□□□□ -0.55
LIG1-220ENST00000601091 CCDC178Q5BJE1 867 aa11.65□□□□□ -0.55
LIG1-220ENST00000601091 TTC38Q5R3I4 469 aa11.65□□□□□ -0.55
LIG1-220ENST00000601091 RBM43Q6ZSC3 357 aaKnown RBP11.65□□□□□ -0.55
LIG1-220ENST00000601091 DHX40Q8IX18 779 aaKnown RBP11.65□□□□□ -0.55
LIG1-220ENST00000601091 LRRN4CLQ8ND94 238 aa11.65□□□□□ -0.55
LIG1-220ENST00000601091 RAB34Q9BZG1 259 aa11.65□□□□□ -0.55
LIG1-220ENST00000601091 FOXP1Q9H334 677 aaPredicted RBP11.65□□□□□ -0.55
LIG1-220ENST00000601091 PIH1D3Q9NQM4 214 aaKnown RBP11.65□□□□□ -0.55
LIG1-220ENST00000601091 WDR70Q9NW82 654 aa11.65□□□□□ -0.55
LIG1-220ENST00000601091 MCM9Q9NXL9 1143 aa11.65□□□□□ -0.55
LIG1-220ENST00000601091 USO1O60763 962 aaKnown RBP11.64□□□□□ -0.55
LIG1-220ENST00000601091 FMNL1O95466 1100 aaPredicted RBP11.64□□□□□ -0.55
LIG1-220ENST00000601091 FGFR1OPO95684 399 aaKnown RBP11.64□□□□□ -0.55
LIG1-220ENST00000601091 ZNF827Q17R98 1081 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 FAM114A1Q8IWE2 563 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 STRBPQ96SI9 672 aaKnown RBP11.64□□□□□ -0.55
LIG1-220ENST00000601091 BPIFA3Q9BQP9 254 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 OSBPL5Q9H0X9 879 aaPredicted RBP11.64□□□□□ -0.55
LIG1-220ENST00000601091 CCDC87Q9NVE4 849 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 ZBTB1Q9Y2K1 713 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 SYNRGQ9UMZ2 1314 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 hCG_1642624A0A1W2PR95 340 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 ATP1A3P13637 1013 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 CCT6AP40227 531 aaKnown RBP11.64□□□□□ -0.55
LIG1-220ENST00000601091 SCARF1Q14162 830 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 DTHD1Q6ZMT9 781 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 CALML4Q96GE6 196 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 LZTS2Q9BRK4 669 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 TSPY3P0CV98 308 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 TSPY8P0CW00 308 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 PIP4K2BP78356 416 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 UBXN1Q04323 297 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 PIGBQ92521 554 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 TRIM6Q9C030 488 aaPredicted RBP11.64□□□□□ -0.55
LIG1-220ENST00000601091 DDX41Q9UJV9 622 aaKnown RBP11.64□□□□□ -0.55
LIG1-220ENST00000601091 PPP2R2CQ9Y2T4 447 aa11.64□□□□□ -0.55
LIG1-220ENST00000601091 STX10O60499 249 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 PIK3AP1Q6ZUJ8 805 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 CEP89Q96ST8 783 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 MTRQ99707 1265 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 ZHX3Q9H4I2 956 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.63□□□□□ -0.55
LIG1-220ENST00000601091 SLIT1O75093 1534 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 TNKSO95271 1327 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 C1orf167Q5SNV9 1468 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 CYLC1P35663 651 aaPredicted RBP11.63□□□□□ -0.55
LIG1-220ENST00000601091 SH3BGRP55822 239 aaPredicted RBP11.63□□□□□ -0.55
LIG1-220ENST00000601091 TMEM266Q2M3C6 531 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 HEATR3Q7Z4Q2 680 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 HOOK3Q86VS8 718 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 FCHSD1Q86WN1 690 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 EHBP1Q8NDI1 1231 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 SETDB2Q96T68 719 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 VPS16Q9H269 839 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 VAT1LQ9HCJ6 419 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 MMP1P03956 469 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 IL6STP40189 918 aaPredicted RBP11.63□□□□□ -0.55
LIG1-220ENST00000601091 ADCY2Q08462 1091 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 SYNE4Q8N205 404 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 SDR42E1Q8WUS8 393 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 EXOC1Q9NV70 894 aa11.63□□□□□ -0.55
LIG1-220ENST00000601091 LUC7L2Q9Y383 392 aaKnown RBP11.63□□□□□ -0.55
LIG1-220ENST00000601091 FDPSP14324 419 aaKnown RBP11.62□□□□□ -0.55
LIG1-220ENST00000601091 USP8P40818 1118 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 CD151P48509 253 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 HLFQ16534 295 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 CACNA2D4Q7Z3S7 1137 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 TBC1D10CQ8IV04 446 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 ENGASEQ8NFI3 743 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 NAA15Q9BXJ9 866 aaKnown RBP11.62□□□□□ -0.55
LIG1-220ENST00000601091 CTNND2Q9UQB3 1225 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 KNDC1Q76NI1 1749 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 IDEP14735 1019 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 SLC7A5Q01650 507 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 IKQ13123 557 aaPredicted RBP11.62□□□□□ -0.55
LIG1-220ENST00000601091 CYB5R4Q7L1T6 521 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 STAMQ92783 540 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 UNC45AQ9H3U1 944 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 TTF2Q9UNY4 1162 aaKnown RBP11.62□□□□□ -0.55
LIG1-220ENST00000601091 TUBBP07437 444 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 TUBB2AQ13885 445 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 ZNF394Q53GI3 561 aa11.62□□□□□ -0.55
LIG1-220ENST00000601091 TMTC1Q8IUR5 882 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms